Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5190
Gene name Gene Name - the full gene name approved by the HGNC.
Peroxisomal biogenesis factor 6
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PEX6
Synonyms (NCBI Gene) Gene synonyms aliases
HMLR2, PAF-2, PAF2, PBD4A, PDB4B, PXAAA1
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6p21.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the AAA (ATPases associated with diverse cellular activities) family of ATPases. This member is a predominantly cytoplasmic protein, which plays a direct role in peroxisomal protein import and is required for PTS1 (peroxisoma
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs34324426 C>T Uncertain-significance, likely-pathogenic, likely-benign, pathogenic, conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs61732159 G>T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, missense variant
rs61752140 A>G Likely-pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs61753209 C>- Pathogenic, likely-pathogenic Non coding transcript variant, coding sequence variant, frameshift variant
rs61753211 CA>- Pathogenic Non coding transcript variant, coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT051925 hsa-let-7b-5p CLASH 23622248
MIRT051759 hsa-let-7c-5p CLASH 23622248
MIRT045684 hsa-miR-149-5p CLASH 23622248
MIRT491362 hsa-miR-1207-3p PAR-CLIP 23592263
MIRT491361 hsa-miR-1292-3p PAR-CLIP 23592263
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001750 Component Photoreceptor outer segment IEA
GO:0005515 Function Protein binding IPI 9588209, 16257970, 16854980
GO:0005524 Function ATP binding IEA
GO:0005524 Function ATP binding IMP 16854980
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601498 8859 ENSG00000124587
Protein
UniProt ID Q13608
Protein name Peroxisomal ATPase PEX6 (EC 3.6.4.-) (Peroxin-6) (Peroxisomal biogenesis factor 6) (Peroxisomal-type ATPase 1) (Peroxisome assembly factor 2) (PAF-2)
Protein function Component of the PEX1-PEX6 AAA ATPase complex, a protein dislocase complex that mediates the ATP-dependent extraction of the PEX5 receptor from peroxisomal membranes, an essential step for PEX5 recycling (PubMed:16314507, PubMed:16854980, PubMed
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00004 AAA 466 595 ATPase family associated with various cellular activities (AAA) Domain
PF00004 AAA 740 872 ATPase family associated with various cellular activities (AAA) Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the retina, at higher levels in the photoreceptor layer at the joint between the outer and inner segments. {ECO:0000269|PubMed:26593283}.
Sequence
MALAVLRVLEPFPTETPPLAVLLPPGGPWPAAELGLVLALRPAGESPAGPALLVAALEGP
DAGTEEQGPGPPQLLVSRALLRLLALGSGAWVRARAVRRPPALGWALLGTSLGPGLGPRV
GPLLVRRGETLPVPGPRVLETRPALQGLLGPGTRLAVTELRGRARLCPESGDSSRPPPPP
VVSSFAVSGTVRRLQGVLGGTGDSLGVSRSCLRGLGLFQGEWVWVAQARESSNTSQPHLA
RVQVLEPRWDLSDRLGPGSGPLGEPLADGLALVPATLAFNLGCDPLEMGELRIQRYLEGS
IAPEDKGSCSLLPGPPFARELHIEIVSSPHYSTNGNYDGVLYRHFQIPRVVQEGDVLCVP
TIGQVEILEGSPEKLPRWREMFFKVKKTVGEAPDGPASAYLADTTHTSLYMVGSTLSPVP
WLPSEESTLWSSLSPPGLEALVSELCAVLKPRLQPGGALLTGTSSVLLRGPPGCGKTTVV
AAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRARRCRPAVLLLTAVDLLGRDRDG
LGEDARVMAVLRHLLLNEDPLNSCPPLMVVATTSRAQDLPADVQTAFPHELEVPA
LSEGQ
RLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLT
EEDEGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILET
IQLPLEHPELLSLGLRRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQ
SEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQ
DVFVIGATNRPDLLDPALLRPGRFDKLVFVGA
NEDRASQLRVLSAITRKFKLEPSVSLVN
VLDCCPPQLTGADLYSLCSDAMTAALKRRVHDLEEGLEPGSSALMLTMEDLLQAAARLQP
SVSEQELLRYKRIQRKFAAC
Sequence length 980
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Peroxisome   Peroxisomal protein import
<
Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Heimler Syndrome heimler syndrome 2 rs1554128461, rs1010184002, rs1443107232, rs1554128586, rs886037781, rs1561831003, rs1554126955, rs62641232, rs781475201, rs886037780, rs766483138, rs763459576, rs398123303, rs863225083, rs61753209
View all (23 more)
N/A
Zellweger Syndrome Zellweger spectrum disorders, Peroxisome biogenesis disorder, peroxisome biogenesis disorder 4b, peroxisome biogenesis disorder 4a (zellweger), peroxisome biogenesis disorder 1a (zellweger) rs62641232, rs1443107232, rs1554127491, rs1554128347, rs61753219, rs267608216, rs1561830903, rs1554126955, rs267608229, rs763459576, rs387906809, rs61753209, rs1554128501, rs766483138, rs398123303
View all (32 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Cerebellar Ataxia autosomal recessive cerebellar ataxia-blindness-deafness syndrome N/A N/A GenCC
retinal dystrophy Retinal dystrophy N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Carcinoma Basal Cell Associate 29967001
Carcinoma Endometrioid Associate 29967001
Deaf Blind Disorders Associate 32214787
Deafness enamel hypoplasia nail defects Associate 26387595, 31831025, 40466212, 40725402
Dental Enamel Hypoplasia Associate 32214787
Facial Dysmorphism with Multiple Malformations Associate 39604887
Hearing Loss Associate 32214787, 39604887
Hypersensitivity Delayed Associate 32214787, 39604887
Lymphoma Associate 34074205
Lymphoma Non Hodgkin Associate 29967001