Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5189
Gene name Gene Name - the full gene name approved by the HGNC.
Peroxisomal biogenesis factor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PEX1
Synonyms (NCBI Gene) Gene synonyms aliases
HMLR1, PBD1A, PBD1B, ZWS, ZWS1
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q21.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the AAA ATPase family, a large group of ATPases associated with diverse cellular activities. This protein is cytoplasmic but is often anchored to a peroxisomal membrane where it forms a heteromeric complex and plays a role in
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs61750406 T>-,TT Pathogenic, likely-pathogenic Frameshift variant, non coding transcript variant, coding sequence variant, 5 prime UTR variant
rs61750409 G>A Likely-pathogenic Non coding transcript variant, stop gained, coding sequence variant
rs61750412 TG>- Likely-pathogenic Frameshift variant, non coding transcript variant, intron variant, coding sequence variant
rs61750414 AG>- Likely-pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
rs61750415 ->A Pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT046918 hsa-miR-221-3p CLASH 23622248
MIRT1225487 hsa-miR-3653 CLIP-seq
MIRT1225488 hsa-miR-3658 CLIP-seq
MIRT1225489 hsa-miR-376a CLIP-seq
MIRT1225490 hsa-miR-376b CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0005515 Function Protein binding IPI 9588209, 16257970, 16854980, 32814053
GO:0005524 Function ATP binding IEA
GO:0005524 Function ATP binding IMP 16854980
GO:0005737 Component Cytoplasm IDA 9588209
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602136 8850 ENSG00000127980
Protein
UniProt ID O43933
Protein name Peroxisomal ATPase PEX1 (EC 3.6.4.-) (Peroxin-1) (Peroxisome biogenesis disorder protein 1) (Peroxisome biogenesis factor 1)
Protein function Component of the PEX1-PEX6 AAA ATPase complex, a protein dislocase complex that mediates the ATP-dependent extraction of the PEX5 receptor from peroxisomal membranes, an essential step for PEX5 recycling (PubMed:11439091, PubMed:16314507, PubMed
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF09263 PEX-2N 17 98 Peroxisome biogenesis factor 1, N-terminal Domain
PF09262 PEX-1N 104 179 Peroxisome biogenesis factor 1, N-terminal Domain
PF00004 AAA 595 733 ATPase family associated with various cellular activities (AAA) Domain
PF00004 AAA 877 1007 ATPase family associated with various cellular activities (AAA) Domain
PF17862 AAA_lid_3 1029 1077 AAA+ lid domain Domain
Sequence
MWGSDRLAGAGGGGAAVTVAFTNARDCFLHLPRRLVAQLHLLQNQAIEVVWSHQPAFLSW
VEGRHFSDQGENVAEINRQVGQKLGLSNGGQVFLKPCS
HVVSCQQVEVEPLSADDWEILE
LHAVSLEQHLLDQIRIVFPKAIFPVWVDQQTYIFIQIVALIPAASYGRLETDTKLLIQP
K
TRRAKENTFSKADAEYKKLHSYGRDQKGMMKELQTKQLQSNTVGITESNENESEIPVDSS
SVASLWTMIGSIFSFQSEKKQETSWGLTEINAFKNMQSKVVPLDNIFRVCKSQPPSIYNA
SATSVFHKHCAIHVFPWDQEYFDVEPSFTVTYGKLVKLLSPKQQQSKTKQNVLSPEKEKQ
MSEPLDQKKIRSDHNEEDEKACVLQVVWNGLEELNNAIKYTKNVEVLHLGKVWIPDDLRK
RLNIEMHAVVRITPVEVTPKIPRSLKLQPRENLPKDISEEDIKTVFYSWLQQSTTTMLPL
VISEEEFIKLETKDGLKEFSLSIVHSWEKEKDKNIFLLSPNLLQKTTIQVLLDPMVKEEN
SEEIDFILPFLKLSSLGGVNSLGVSSLEHITHSLLGRPLSRQLMSLVAGLRNGALLLTGG
KGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEAVWMQPSVVL
LDDLDLIAGLPAVPEHEHSPDAVQSQRLAHALNDMIKEFISMGSLVALIATSQSQQSLHP
LLVSAQGVHIFQC
VQHIQPPNQEQRCEILCNVIKNKLDCDINKFTDLDLQHVAKETGGFV
ARDFTVLVDRAIHSRLSRQSISTREKLVLTTLDFQKALRGFLPASLRSVNLHKPRDLGWD
KIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRM
NFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRV
VNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPP
PDQVSRLEILNVL
SDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEALHGMLLSSGLQDGSSSSDSDLS
LSSMVFLNHSSGSDDSAGDGECGLDQSLVSLEMSEILPDESKFNMYRLYFGSSYESELGN
GTSSDLSSQCLSAPSSMTQDLPGVPGKDQLFSQPPVLRTASQEGCQELTQEQRDQLRADI
SIIKGRYRSQSGEDESMNQPGPIKTRLAISQSHLMTALGHTRPSISEDDWKNFAELYESF
QNPKRRKNQSGTMFRPGQKVTLA
Sequence length 1283
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Peroxisome   Peroxisomal protein import
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Heimler syndrome heimler syndrome 1 rs61750418, rs1057517481, rs786204638, rs267608180, rs1554370868, rs751829426, rs1057517469, rs61750407, rs1562846257, rs1057517468, rs61750423, rs1562846113, rs1554372180, rs863225085, rs1057517531
View all (45 more)
N/A
retinal dystrophy Retinal dystrophy rs61750415, rs61750423, rs370483961, rs1562846257 N/A
Zellweger Syndrome Zellweger spectrum disorders, Peroxisome biogenesis disorder 1B, peroxisome biogenesis disorder 1a (zellweger), Peroxisome biogenesis disorder, Peroxisome biogenesis disorder due to PEX1 defect rs1562846257, rs1057517464, rs1554372180, rs61750428, rs756876301, rs1585244586, rs1057517463, rs1562846113, rs1057517488, rs1057517506, rs1585254187, rs1057517489, rs1057517485, rs886043479, rs1057517468
View all (106 more)
N/A
Leber Congenital Amaurosis leber congenital amaurosis rs61750420 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Microcephaly microcephaly N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Amelogenesis Imperfecta Associate 40466212
Anodontia Associate 40466212
Arachnodactyly Associate 40466212
Deafness enamel hypoplasia nail defects Associate 26387595, 31831025, 40466212
Hearing Loss Sensorineural Associate 40466212
Nails Malformed Associate 40466212
Neurologic Manifestations Associate 9671729
Obesity Associate 28508493
Peroxisomal Disorders Associate 20212125
Peroxisome biogenesis disorders Associate 11389485, 16141001, 16257970, 19105186