Gene Gene information from NCBI Gene database.
Entrez ID 51755
Gene name Cyclin dependent kinase 12
Gene symbol CDK12
Synonyms (NCBI Gene)
CRK7CRKRCRKRS
Chromosome 17
Chromosome location 17q12
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs1131692238 G>T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
271
miRTarBase ID miRNA Experiments Reference
MIRT047459 hsa-miR-10b-5p CLASH 23622248
MIRT044886 hsa-miR-193a-3p CLASH 23622248
MIRT041547 hsa-miR-193b-3p CLASH 23622248
MIRT041108 hsa-miR-503-5p CLASH 23622248
MIRT037446 hsa-miR-744-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000307 Component Cyclin-dependent protein kinase holoenzyme complex IEA
GO:0002944 Component Cyclin K-CDK12 complex IPI 22012619, 26597175
GO:0004672 Function Protein kinase activity IDA 11683387
GO:0004672 Function Protein kinase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
615514 24224 ENSG00000167258
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NYV4
Protein name Cyclin-dependent kinase 12 (EC 2.7.11.22) (EC 2.7.11.23) (Cdc2-related kinase, arginine/serine-rich) (CrkRS) (Cell division cycle 2-related protein kinase 7) (CDC2-related protein kinase 7) (Cell division protein kinase 12) (hCDK12)
Protein function Cyclin-dependent kinase that phosphorylates the C-terminal domain (CTD) of the large subunit of RNA polymerase II (POLR2A), thereby acting as a key regulator of transcription elongation. Regulates the expression of genes involved in DNA repair a
PDB 4CXA , 4NST , 4UN0 , 5ACB , 6B3E , 6CKX , 6TD3 , 7NXK , 8BU1 , 8BU2 , 8BU3 , 8BU4 , 8BU5 , 8BU6 , 8BU7 , 8BU9 , 8BUA , 8BUB , 8BUC , 8BUD , 8BUE , 8BUF , 8BUG , 8BUH , 8BUI , 8BUJ , 8BUK , 8BUL , 8BUM , 8BUN , 8BUO , 8BUP , 8BUQ , 8BUR , 8BUS , 8BUT , 8P81 , 9FMR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00069 Pkinase 727 1020 Protein kinase domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:11683387}.
Sequence
MPNSERHGGKKDGSGGASGTLQPSSGGGSSNSRERHRLVSKHKRHKSKHSKDMGLVTPEA
ASLGTVIKPLVEYDDISSDSDTFSDDMAFKLDRRENDERRGSDRSDRLHKHRHHQHRRSR
DLLKAKQTEKEKSQEVSSKSGSMKDRISGSSKRSNEETDDYGKAQVAKSSSKESRSSKLH
KEKTRKERELKSGHKDRSKSHRKRETPKSYKTVDSPKRRSRSPHRKWSDSSKQDDSPSGA
SYGQDYDLSPSRSHTSSNYDSYKKSPGSTSRRQSVSPPYKEPSAYQSSTRSPSPYSRRQR
SVSPYSRRRSSSYERSGSYSGRSPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSP
AYSRHSSSHSKKKRSSSRSRHSSISPVRLPLNSSLGAELSRKKKERAAAAAAAKMDGKES
KGSPVFLPRKENSSVEAKDSGLESKKLPRSVKLEKSAPDTELVNVTHLNTEVKNSSDTGK
VKLDENSEKHLVKDLKAQGTRDSKPIALKEEIVTPKETETSEKETPPPLPTIASPPPPLP
TTTPPPQTPPLPPLPPIPALPQQPPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQAN
SQPPVQVSVKTQVSVTAAIPHLKTSTLPPLPLPPLLPGDDDMDSPKETLPSKPVKKEKEQ
RTRHLLTDLPLPPELPGGDLSPPDSPEPKAITPPQQPYKKRPKICCPRYGERRQTESDWG
KRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQ
LIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFM
KQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSEESRPYTNKVITLW
YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW
PDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFL

KDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGVVVEEPPPSKTSRKETTSGTSTEPVK
NSSPAPPQPAPGKVESGAGDAIGLADITQQLNQSELAVLLNLLQSQTDLSIPQMAQLLNI
HSNPEMQQQLEALNQSISALTEATSQQQDSETMAPEESLKEAPSAPVILPSAEQTTLEAS
STPADMQNILAVLLSQLMKTQEPAGSLEENNSDKNSGPQGPRRTPTMPQEEAAACPPHIL
PPEKRPPEPPGPPPPPPPPPLVEGDLSSAPQELNPAVTAALLQLLSQPEAEPPGHLPHEH
QALRPMEYSTRPRPNRTYGNTDGPETGFSAIDTDERNSGPALTESLVQTLVKNRTFSGSL
SHLGESSSYQGTGSVQFPGDQDLRFARVPLALHPVVGQPFLKAEGSSNSVVHAETKLQNY
GELGPGTTGASSSGAGLHWGGPTQSSAYGKLYRGPTRVPPRGGRGRGVPY
Sequence length 1490
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    TP53 Regulates Transcription of DNA Repair Genes
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
67
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Lung adenocarcinoma Likely pathogenic rs1131692238 RCV000491773
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
CDK12-related disorder Benign; Likely benign rs12950784, rs35896550, rs61747413, rs61747430, rs61741615, rs56362165, rs34070318, rs149034064, rs138760396, rs56158954, rs61747400, rs183497483, rs144241130, rs959591701, rs56403491
View all (7 more)
RCV003931241
RCV003931257
RCV003925174
RCV003915194
RCV003925175
RCV003915195
RCV003925176
RCV003916393
RCV003951343
RCV003916394
RCV003926332
RCV003909406
RCV003924052
RCV003893616
RCV003912277
RCV003934055
RCV003941377
RCV003941727
RCV003914374
RCV003922026
RCV003969228
RCV003976280
Hereditary breast ovarian cancer syndrome Benign; Likely benign; Uncertain significance rs12950784, rs8070799, rs35896550, rs72827109, rs112561954, rs61747413, rs61747430, rs61741615, rs56362165, rs34070318, rs753195869, rs183690426, rs149034064, rs1222067329, rs138760396
View all (15 more)
RCV002225871
RCV002225876
RCV002225896
RCV002225904
RCV002225917
RCV002225369
RCV002225370
RCV002225371
RCV002225372
RCV002225373
RCV002226289
RCV002226290
RCV002226291
RCV002226293
RCV002226294
RCV002226295
RCV002226296
RCV002226297
RCV002226298
RCV002226299
RCV002226300
RCV002226301
RCV002226302
RCV002226303
RCV002226304
RCV002226305
RCV002226306
RCV002226307
RCV002226308
RCV002226309
RCV002226310
Hereditary cancer Conflicting classifications of pathogenicity rs767287779 RCV005235641
Malignant lymphoma, large B-cell, diffuse Benign rs11657899 RCV005922206
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 32534699
Adenocarcinoma of Lung Associate 30617155
Biliary Tract Neoplasms Associate 35583261
Breast Neoplasms Associate 24395524, 27251275, 28334900, 29133620, 32638235, 36404592, 38335502, 39264897, 40623188
Breast Neoplasms Male Associate 33964913
Calcinosis Cutis Associate 32220891
Carcinogenesis Associate 28334900
Carcinoma Non Small Cell Lung Associate 28230015, 38132164
Chordoma Associate 30664779
Colorectal Neoplasms Associate 34289372, 35567913, 36254394