Gene Gene information from NCBI Gene database.
Entrez ID 51715
Gene name RAB23, member RAS oncogene family
Gene symbol RAB23
Synonyms (NCBI Gene)
HSPC137
Chromosome 6
Chromosome location 6p12.1-p11.2
Summary This gene encodes a small GTPase of the Ras superfamily. Rab proteins are involved in the regulation of diverse cellular functions associated with intracellular membrane trafficking, including autophagy and immune response to bacterial infection. The enco
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs121908171 A>T Pathogenic Intron variant, coding sequence variant, stop gained
rs765443042 G>A Pathogenic, conflicting-interpretations-of-pathogenicity Coding sequence variant, stop gained, non coding transcript variant
rs1060505026 C>G Pathogenic Intron variant, coding sequence variant, missense variant
rs1438138090 ->A Pathogenic Stop gained, intron variant, coding sequence variant
rs1593223800 ->T Pathogenic Coding sequence variant, stop gained, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
317
miRTarBase ID miRNA Experiments Reference
MIRT001513 hsa-miR-155-5p pSILAC 18668040
MIRT001513 hsa-miR-155-5p Proteomics;Other 18668040
MIRT024924 hsa-miR-215-5p Microarray 19074876
MIRT026693 hsa-miR-192-5p Microarray 19074876
MIRT027149 hsa-miR-103a-3p Sequencing 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
40
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IBA
GO:0000045 Process Autophagosome assembly IMP 22452336
GO:0000166 Function Nucleotide binding IEA
GO:0003924 Function GTPase activity IBA
GO:0003924 Function GTPase activity IDA 17646400, 22365972
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606144 14263 ENSG00000112210
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9ULC3
Protein name Ras-related protein Rab-23 (EC 3.6.5.2)
Protein function The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to r
PDB 8YIM , 8YL3 , 8YNR , 8YO0 , 8YP0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00071 Ras 11 171 Ras family Domain
Sequence
Sequence length 237
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    RAB geranylgeranylation
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
309
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Carpenter syndrome Pathogenic; Likely pathogenic rs2127998022, rs1049674573, rs2128004184, rs2127997677, rs2127997697, rs2127998544, rs373724159, rs121908171, rs1438138090, rs2533178501, rs2533178301, rs765443042, rs2533178365, rs762512079, rs2533214937
View all (6 more)
RCV001383516
RCV001386671
RCV001382455
RCV001944873
RCV002010246
RCV001971319
RCV002041723
RCV000791402
RCV005089169
RCV002856938
RCV003039548
RCV001034654
RCV003493349
RCV003591191
RCV003757484
RCV003757564
RCV003867053
RCV000477736
RCV000823068
RCV001237096
RCV001227329
Clear cell carcinoma of kidney Pathogenic rs121908171 RCV005887296
RAB23-related Carpenter syndrome Pathogenic; Likely pathogenic rs2127998616, rs2127997645, rs121908171, rs1438138090, rs765443042, rs1593223800 RCV001580137
RCV001580770
RCV000004853
RCV000004854
RCV000546008
RCV000004855
RAB23-related disorder Pathogenic; Likely pathogenic rs121908171, rs1438138090, rs765443042 RCV003415654
RCV003415655
RCV003930036
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs9357941 RCV005918780
Bladder exstrophy-epispadias-cloacal extrophy complex Uncertain significance rs757383592 RCV003389440
Gastric cancer Likely benign rs779791425 RCV005934834
Ovarian serous cystadenocarcinoma Benign rs9357941 RCV005918782
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acrocephalopolysyndactyly Type II Associate 17503333, 21412941
Adenocarcinoma Follicular Stimulate 17660800
Adenoma Associate 17660800
Astrocytoma Associate 26897750
Breast Neoplasms Associate 24447584
Calcinosis Cutis Associate 25867419
Carcinoma Hepatocellular Associate 17373734, 37884351
Carcinoma Hepatocellular Stimulate 30191377
Carcinoma Pancreatic Ductal Associate 25867419
Carcinoma Papillary Follicular Associate 17660800