Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5142
Gene name Gene Name - the full gene name approved by the HGNC.
Phosphodiesterase 4B
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PDE4B
Synonyms (NCBI Gene) Gene synonyms aliases
DPDE4, PDEIVB
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p31.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is a member of the type IV, cyclic AMP (cAMP)-specific, cyclic nucleotide phosphodiesterase (PDE) family. The encoded protein regulates the cellular concentrations of cyclic nucleotides and thereby play a role in signal transduction. Altered act
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT144178 hsa-miR-374a-5p HITS-CLIP 22473208
MIRT726989 hsa-miR-26a-5p HITS-CLIP 22473208
MIRT726988 hsa-miR-26b-5p HITS-CLIP 22473208
MIRT144178 hsa-miR-374a-5p HITS-CLIP 22473208
MIRT1220468 hsa-miR-1207-5p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000930 Component Gamma-tubulin complex IEA
GO:0001780 Process Neutrophil homeostasis IEA
GO:0001780 Process Neutrophil homeostasis ISS
GO:0004114 Function 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
GO:0004115 Function 3',5'-cyclic-AMP phosphodiesterase activity IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600127 8781 ENSG00000184588
Protein
UniProt ID Q07343
Protein name 3',5'-cyclic-AMP phosphodiesterase 4B (EC 3.1.4.53) (DPDE4) (PDE32) (cAMP-specific phosphodiesterase 4B)
Protein function Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes (PubMed:15260978). May be involved in mediating central nervous system effects of therapeutic agents ranging from antidepressants to antiast
PDB 1F0J , 1RO6 , 1RO9 , 1ROR , 1TB5 , 1XLX , 1XLZ , 1XM4 , 1XM6 , 1XMU , 1XMY , 1XN0 , 1XOS , 1XOT , 1Y2H , 1Y2J , 2CHM , 2QYL , 3D3P , 3FRG , 3G45 , 3GWT , 3HC8 , 3HDZ , 3HMV , 3KKT , 3LY2 , 3O0J , 3O56 , 3O57 , 3W5E , 3WD9 , 4KP6 , 4MYQ , 4NW7 , 4WZI , 4X0F , 5K6J , 5LAQ , 5OHJ , 6BOJ , 8OEG
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18100 PDE4_UCR 166 281 Phosphodiesterase 4 upstream conserved regions (UCR) Domain
PF00233 PDEase_I 405 646 Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in brain, heart, lung and skeletal muscle (PubMed:17519386). Expressed in white blood cells (PubMed:8392015). {ECO:0000269|PubMed:17519386, ECO:0000269|PubMed:8392015}.; TISSUE SPECIFICITY: [Isoform PDE4B5]: Brain-specific is
Sequence
MKKSRSVMTVMADDNVKDYFECSLSKSYSSSSNTLGIDLWRGRRCCSGNLQLPPLSQRQS
ERARTPEGDGISRPTTLPLTTLPSIAITTVSQECFDVENGPSPGRSPLDPQASSSAGLVL
HATFPGHSQRRESFLYRSDSDYDLSPKAMSRNSSLPSEQHGDDLIVTPFAQVLASLRSVR
NNFTILTNLHGTSNKRSPAASQPPVSRVNPQEESYQKLAMETLEELDWCLDQLETIQTYR
SVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLD
KQNDVEIPSPTQKDREKKK
KQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSH
NRPLTCIMYAIFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHV
LLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL
AVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTS
SGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQGDKERERGMEI
SPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLE
DNRNWYQSMIPQSP
SPPLDEQNRDCQGLMEKFQFELTLDEEDSEGPEKEGEGHSYFSSTKTLCVIDPENRDSLG
ETDIDIATEDKSPVDT
Sequence length 736
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Purine metabolism
Metabolic pathways
cAMP signaling pathway
Parathyroid hormone synthesis, secretion and action
Morphine addiction
  DARPP-32 events
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Anxiety Disorder Anxiety disorders N/A N/A GWAS
Cervical Cancer Cervical cancer N/A N/A GWAS
Gastroesophageal Reflux Disease Gastroesophageal reflux disease N/A N/A GWAS
Heart Failure Heart failure N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Arthritis Psoriatic Associate 30181004
Breast Neoplasms Associate 29061142
Cardiac Output Low Associate 34788622
Colitis Associate 31730855
Colorectal Neoplasms Stimulate 22830422
Colorectal Neoplasms Associate 27927168, 39202484
Cryptorchidism Inhibit 25546171
Cryptorchidism Associate 25546171
Depressive Disorder Associate 19300510
Dermatitis Atopic Associate 36142206