Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
51119
Gene name Gene Name - the full gene name approved by the HGNC.
SBDS ribosome maturation factor
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SBDS
Synonyms (NCBI Gene) Gene synonyms aliases
CGI-97, SDO1, SDS, SWDS
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q11.21
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a highly conserved protein that plays an essential role in ribosome biogenesis. The encoded protein interacts with elongation factor-like GTPase 1 to disassociate eukaryotic initiation factor 6 from the late cytoplasmic pre-60S ribosomal
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs113993991 TA>AG Pathogenic Coding sequence variant, stop gained
rs113993992 C>G Pathogenic Splice donor variant
rs113993993 A>C,G Risk-factor, pathogenic Splice donor variant
rs113993994 CTTT>- Pathogenic Coding sequence variant, frameshift variant
rs113993995 C>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT016171 hsa-miR-590-3p Sequencing 20371350
MIRT051786 hsa-let-7c-5p CLASH 23622248
MIRT1326686 hsa-miR-103a CLIP-seq
MIRT1326687 hsa-miR-107 CLIP-seq
MIRT1326688 hsa-miR-1183 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000922 Component Spindle pole IDA 18324336, 19759903
GO:0001833 Process Inner cell mass cell proliferation IEA
GO:0002244 Process Hematopoietic progenitor cell differentiation IMP 19759903
GO:0003723 Function RNA binding HDA 22658674
GO:0005515 Function Protein binding IPI 17475909, 17643419, 20015955, 21044950, 26871637
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
607444 19440 ENSG00000126524
Protein
UniProt ID Q9Y3A5
Protein name Ribosome maturation protein SBDS (Shwachman-Bodian-Diamond syndrome protein)
Protein function Required for the assembly of mature ribosomes and ribosome biogenesis. Together with EFL1, triggers the GTP-dependent release of EIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80
PDB 2KDO , 2L9N , 5AN9 , 5ANB , 5ANC , 6QKL
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01172 SBDS 14 101 Shwachman-Bodian-Diamond syndrome (SBDS) protein Family
PF09377 SBDS_C 107 225 SBDS protein C-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed.
Sequence
Sequence length 250
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Ribosome biogenesis in eukaryotes  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia, Aplastic anemia, idiopathic rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
17478638
Aplastic anemia Aplastic Anemia, Idiopathic aplastic anemia rs113993991, rs113993993, rs864309668, rs121908974, rs199422265, rs199422270, rs104894176, rs104894180, rs28933973, rs104894182, rs28933376, rs771552960, rs786205093, rs193302876, rs113993992
View all (104 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Diabetes mellitus Diabetes Mellitus, Insulin-Dependent rs587776515, rs61730328, rs606231121, rs606231122, rs79020217, rs77625743, rs78378398, rs606231123, rs1362648752, rs104893649, rs80356624, rs80356616, rs80356625, rs80356611, rs104894237
View all (293 more)
Unknown
Disease term Disease name Evidence References Source
Myocardial infarction Myocardial Infarction ClinVar
Shwachman syndrome Shwachman syndrome 15701631, 21695142, 17475909, 12496757, 15284109, 14749921, 26081292, 29753700, 29375851, 17916435, 15769891, 23602541, 28297620, 24898207, 23351992
View all (10 more)
ClinVar
Specific learning disorder Specific learning disability ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Anemia Aplastic Associate 17478638
Anemia Diamond Blackfan Associate 17475909, 21963601
Aneuploidy Associate 18324336
Bone Marrow Diseases Associate 22371183
Bone Marrow Failure Disorders Associate 19016724, 20658628, 34758064, 37450374
Breast Neoplasms Associate 30792990
Congenital Bone Marrow Failure Syndromes Associate 18324336
Immunologic Deficiency Syndromes Associate 17478638
Leukemia Associate 18324336
Leukemia Myeloid Acute Associate 19759903