Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
51092
Gene name Gene Name - the full gene name approved by the HGNC.
SID1 transmembrane family member 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SIDT2
Synonyms (NCBI Gene) Gene synonyms aliases
CGI-40
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11q23.3
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT443813 hsa-miR-6838-5p PAR-CLIP 22100165
MIRT443814 hsa-miR-195-5p PAR-CLIP 22100165
MIRT443812 hsa-miR-15b-5p PAR-CLIP 22100165
MIRT443811 hsa-miR-424-5p PAR-CLIP 22100165
MIRT443810 hsa-miR-497-5p PAR-CLIP 22100165
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003677 Function DNA binding IEA
GO:0003725 Function Double-stranded RNA binding IBA 21873635
GO:0005764 Component Lysosome IBA 21873635
GO:0005764 Component Lysosome IDA 28277980
GO:0005765 Component Lysosomal membrane IDA 17897319
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
617551 24272 ENSG00000149577
Protein
UniProt ID Q8NBJ9
Protein name SID1 transmembrane family member 2
Protein function Mediates the translocation of RNA and DNA across the lysosomal membrane during RNA and DNA autophagy (RDA), a process in which RNA or DNA is directly imported into lysosomes in an ATP-dependent manner, and degraded (PubMed:27046251, PubMed:27846
PDB 7Y63 , 7Y68 , 7Y69 , 8J6O , 8K10 , 8K11 , 8K12
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13965 SID-1_RNA_chan 169 832 dsRNA-gated channel SID-1 Family
Sequence
MFALGLPFLVLLVASVESHLGVLGPKNVSQKDAEFERTYVDEVNSELVNIYTFNHTVTRN
RTEGVRVSVNVLNKQKGAPLLFVVRQKEAVVSFQVPLILRGMFQRKYLYQKVERTLCQPP
TKNESEIQFFYVDVSTLSPVNTTYQLRVSRMDDFVLRTGEQFSFNTTAAQPQYFKYEFPE
GVDSVIVKVTSNKAFPCSVISIQDVLCPVYDLDNNVAFIGMYQTMTKKAAITVQRKDFPS
NSFYVVVVVKTEDQACGGSLPFYPFAEDEPVDQGHRQKTLSVLVSQAVTSEAYVSGMLFC
LGIFLSFYLLTVLLACWENWRQKKKTLLVAIDRACPESGHPRVLADSFPGSSPYEGYNYG
SFENVSGSTDGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDK
NVIRTKQYLYVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGN
QDICYYNFLCAHPLGNLSAFNNILSNLGYILLGLLFLLIILQREINHNRALLRNDLCALE
CGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHP
DINASAYSAYACLAIVIFFSVLGVVFGKGNTAFWIVFSIIHIIATLLLSTQLYYMGRWKL
DSGIFRRILHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRPNDFASYLLA
IGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAES
REHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF
Sequence length 832
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Lung cancer Malignant neoplasm of lung rs121913530, rs121913529, rs878855122, rs1057519784, rs770315135 27935865
Unknown
Disease term Disease name Evidence References Source
Metabolic Syndrome Metabolic Syndrome GWAS
Hypothyroidism Hypothyroidism GWAS
Associations from Text Mining
Disease Name Relationship Type References
Critical Illness Associate 38275610
Diabetes Mellitus Type 2 Associate 33066450
Herpes Simplex Associate 33548076
Metabolic Syndrome Associate 30382898, 33066450, 38201907
Neoplasms Associate 37522128
Neuroendocrine Tumors Associate 37522128
Thyroid Cancer Papillary Associate 34781815