Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
51082
Gene name Gene Name - the full gene name approved by the HGNC.
RNA polymerase I and III subunit D
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
POLR1D
Synonyms (NCBI Gene) Gene synonyms aliases
AC19, POLR1C, RPA16, RPA9, RPAC2, RPC16, RPO1-3, TCS2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
TCS2
Chromosome Chromosome number
13
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
13q12.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a component of the RNA polymerase I and RNA polymerase III complexes, which function in the synthesis of ribosomal RNA precursors and small RNAs, respectively. Mutations in this gene are a cause of Treacher Collins synd
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1593275599 C>T Pathogenic Genic upstream transcript variant, stop gained, coding sequence variant, intron variant
rs1593275616 ->GG Pathogenic Genic upstream transcript variant, frameshift variant, coding sequence variant, intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT027718 hsa-miR-98-5p Microarray 19088304
MIRT038262 hsa-miR-374a-3p CLASH 23622248
MIRT640828 hsa-miR-589-3p HITS-CLIP 19536157
MIRT640827 hsa-miR-186-3p HITS-CLIP 19536157
MIRT640828 hsa-miR-589-3p HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003677 Function DNA binding IEA
GO:0003899 Function DNA-directed 5'-3' RNA polymerase activity IBA 21873635
GO:0005515 Function Protein binding IPI 16189514, 21988832, 25416956, 32296183, 32814053
GO:0005666 Component RNA polymerase III complex IBA 21873635
GO:0005736 Component RNA polymerase I complex IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613715 20422 ENSG00000186184
Protein
UniProt ID P0DPB6
Protein name DNA-directed RNA polymerases I and III subunit RPAC2 (RNA polymerases I and III subunit AC2) (AC19) (DNA-directed RNA polymerase I subunit D) (RNA polymerase I 16 kDa subunit) (RPA16) (RPC16) (hRPA19)
Protein function DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I and III which synthesize ribosomal RNA precursors and short non-coding RNAs
PDB 7A6H , 7AE1 , 7AE3 , 7AEA , 7AST , 7D58 , 7D59 , 7DN3 , 7DU2 , 7FJI , 7FJJ , 7OB9 , 7OBA , 7OBB , 7VBA , 7VBB , 7VBC , 8A43 , 8ITY , 8IUE , 8IUH , 9FSO , 9FSP , 9FSQ , 9FSR , 9FSS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13656 RNA_pol_L_2 39 113 RNA polymerase Rpb3/Rpb11 dimerisation domain Domain
Sequence
MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDK
FEASIKD
YKDQKASRNESTF
Sequence length 133
UniProt ID P0DPB5
Protein name Protein POLR1D, isoform 2
Family and domains
Sequence
MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
RR
Sequence length 122
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  RNA polymerase
Cytosolic DNA-sensing pathway
  Cytosolic sensors of pathogen-associated DNA
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Transcription Termination
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Congenital ocular coloboma Congenital ocular coloboma (disorder) rs587778875, rs587777249, rs767611891, rs2091986259, rs2091987023, rs2091988799
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Treacher Collins syndrome Treacher-Collins syndrome GenCC
Metabolic Syndrome Metabolic Syndrome GWAS
Diabetes Diabetes GWAS
Associations from Text Mining
Disease Name Relationship Type References
Colorectal Neoplasms Associate 19359472, 32087735
Kininogen Deficiency High Molecular Weight and Low Molecular Weight Associate 25790162
Mandibulofacial Dysostosis Associate 24603435, 25790162, 31307516, 32537850, 37222571, 39518953
Multiple Sclerosis Associate 23077530
Neoplasms Inhibit 19359472
Parkinson Disease Associate 31199560
Squamous Cell Carcinoma of Head and Neck Associate 38256104