Gene Gene information from NCBI Gene database.
Entrez ID 5019
Gene name 3-oxoacid CoA-transferase 1
Gene symbol OXCT1
Synonyms (NCBI Gene)
OXCTSCOT
Chromosome 5
Chromosome location 5p13.1
Summary This gene encodes a member of the 3-oxoacid CoA-transferase gene family. The encoded protein is a homodimeric mitochondrial matrix enzyme that plays a central role in extrahepatic ketone body catabolism by catalyzing the reversible transfer of coenzyme A
SNPs SNP information provided by dbSNP.
15
SNP ID Visualize variation Clinical significance Consequence
rs75134564 G>A Likely-benign, pathogenic, benign Coding sequence variant, missense variant, non coding transcript variant, genic upstream transcript variant
rs76956231 G>A Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant, genic upstream transcript variant
rs121909299 G>C Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs121909300 C>A Pathogenic Missense variant, non coding transcript variant, downstream transcript variant, coding sequence variant, genic downstream transcript variant
rs121909301 C>T Pathogenic Missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
254
miRTarBase ID miRNA Experiments Reference
MIRT020769 hsa-miR-155-5p Proteomics 18668040
MIRT023755 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT029445 hsa-miR-26b-5p Microarray 19088304
MIRT048474 hsa-miR-100-5p CLASH 23622248
MIRT1208482 hsa-miR-1305 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IBA
GO:0005739 Component Mitochondrion IDA 11756565
GO:0005739 Component Mitochondrion IEA
GO:0005739 Component Mitochondrion NAS 10964512
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601424 8527 ENSG00000083720
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P55809
Protein name Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial (SCOT) (EC 2.8.3.5) (3-oxoacid CoA-transferase 1) (Somatic-type succinyl-CoA:3-oxoacid CoA-transferase) (SCOT-s) (Succinyl-CoA:3-oxoacid CoA transferase)
Protein function Key enzyme for ketone body catabolism. Catalyzes the first, rate-limiting step of ketone body utilization in extrahepatic tissues, by transferring coenzyme A (CoA) from a donor thiolester species (succinyl-CoA) to an acceptor carboxylate (acetoa
PDB 3DLX
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01144 CoA_trans 43 272 Coenzyme A transferase Domain
PF01144 CoA_trans 302 501 Coenzyme A transferase Domain
Tissue specificity TISSUE SPECIFICITY: Abundant in heart, followed in order by brain, kidney, skeletal muscle, and lung, whereas in liver it is undetectable. Expressed (at protein level) in all tissues (except in liver), most abundant in myocardium, then brain, kidney, adre
Sequence
Sequence length 520
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Valine, leucine and isoleucine degradation
Butanoate metabolism
Metabolic pathways
  Utilization of Ketone Bodies
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
211
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
OXCT1-related disorder Likely pathogenic; Pathogenic rs2478601239 RCV003410040
Succinyl-CoA acetoacetate transferase deficiency Pathogenic; Likely pathogenic rs369643387, rs2112279054, rs758813974, rs2112471375, rs2112440626, rs2112279505, rs2478312896, rs2478601239, rs121909299, rs121909300, rs121909301, rs121909302, rs202242762, rs2478254671, rs1561081472
View all (5 more)
RCV001374718
RCV001383891
RCV001383892
RCV001782560
RCV001782561
RCV002250168
RCV002283623
RCV003046614
RCV000008641
RCV000008642
RCV000008644
RCV000008645
RCV000318300
RCV003985206
RCV000034378
RCV000785998
RCV000984940
RCV000987519
RCV001027978
RCV001250200
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs267606930 -
Adrenocortical carcinoma, hereditary Benign rs78432029 RCV005888429
Clear cell carcinoma of kidney Benign rs78432029 RCV005888430
Gastric cancer Benign rs78432029 RCV005888432
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 35482822
Aortic Aneurysm Thoracic Inhibit 37193023
Aortic Dissection Associate 37193023
Carcinoma Hepatocellular Associate 36308411, 38176415
Carcinoma Non Small Cell Lung Associate 35482822
Diabetes Mellitus Associate 19296078
Diabetes Mellitus Type 2 Associate 19296078
Diabetic Cardiomyopathies Associate 38160540
Dissection Thoracic Aorta Inhibit 37193023
Hepatoblastoma Associate 39684755