Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4973
Gene name Gene Name - the full gene name approved by the HGNC.
Oxidized low density lipoprotein receptor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
OLR1
Synonyms (NCBI Gene) Gene synonyms aliases
CLEC8A, LOX1, LOXIN, SCARE1, SLOX1
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12p13.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a low density lipoprotein receptor that belongs to the C-type lectin superfamily. This gene is regulated through the cyclic AMP signaling pathway. The encoded protein binds, internalizes and degrades oxidized low-density lipoprotein. Thi
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs11053646 C>G Risk-factor Missense variant, coding sequence variant, intron variant
rs12316150 A>T Risk-factor 3 prime UTR variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT020773 hsa-miR-155-5p Western blot 21030878
MIRT027749 hsa-miR-98-5p Microarray 19088304
MIRT031012 hsa-miR-21-5p Microarray 18591254
MIRT708497 hsa-miR-4797-5p HITS-CLIP 19536157
MIRT708496 hsa-miR-5586-3p HITS-CLIP 19536157
Transcription factors
Transcription factor Regulation Reference
HR Activation 20881612
NFKB1 Unknown 15001526
RELA Unknown 15001526
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005041 Function Low-density lipoprotein particle receptor activity IBA 21873635
GO:0005515 Function Protein binding IPI 24846140
GO:0005576 Component Extracellular region IEA
GO:0005654 Component Nucleoplasm IDA
GO:0005886 Component Plasma membrane IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602601 8133 ENSG00000173391
Protein
UniProt ID P78380
Protein name Oxidized low-density lipoprotein receptor 1 (Ox-LDL receptor 1) (C-type lectin domain family 8 member A) (Lectin-like oxidized LDL receptor 1) (LOX-1) (Lectin-like oxLDL receptor 1) (hLOX-1) (Lectin-type oxidized LDL receptor 1) [Cleaved into: Oxidized lo
Protein function Receptor that mediates the recognition, internalization and degradation of oxidatively modified low density lipoprotein (oxLDL) by vascular endothelial cells. OxLDL is a marker of atherosclerosis that induces vascular endothelial cell activation
PDB 1YPO , 1YPQ , 1YPU , 1YXJ , 1YXK , 3VLG , 6TL7 , 6TL9 , 6TLA , 7R8U , 7W5D , 7XMP
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08391 Ly49 32 158 Ly49-like protein, N-terminal region Family
PF00059 Lectin_C 161 266 Lectin C-type domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed at high level in endothelial cells and vascular-rich organs such as placenta, lung, liver and brain, aortic intima, bone marrow, spinal cord and substantia nigra. Also expressed at the surface of dendritic cells. Widely expre
Sequence
Sequence length 273
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  PPAR signaling pathway
Phagosome
Lipid and atherosclerosis
  Cell surface interactions at the vascular wall
Neutrophil degranulation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Arthritis Juvenile arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 19565504
Cardiomyopathy Cardiomyopathies, Primary, Cardiomyopathies rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
16055083
Hypertension Hypertensive disease rs13306026 22352330
Unknown
Disease term Disease name Evidence References Source
Congestive heart failure Congestive heart failure 22352330 ClinVar
Heart failure Heart failure, Left-Sided Heart Failure, Heart Failure, Right-Sided 22352330 ClinVar
Myocardial infarction Myocardial Infarction, Myocardial Failure 14684693, 12646194, 22352330 ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Achalasia Addisonianism Alacrimia syndrome Associate 15562935
Alzheimer Disease Associate 12807963
Anemia Sickle Cell Associate 27519944
Arthritis Rheumatoid Associate 15529384
Arthritis Rheumatoid Stimulate 24000379
Asthma Associate 25335167
Atherosclerosis Associate 10085242, 11728449, 15001526, 15010359, 15562935, 16173915, 16698017, 17420607, 18384690, 18390905, 18469066, 19667111, 20181930, 20385360, 20508287
View all (22 more)
Atrial Fibrillation Associate 18375832
Brain Ischemia Associate 31943892
Breast Neoplasms Stimulate 30718451