Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4967
Gene name Gene Name - the full gene name approved by the HGNC.
Oxoglutarate dehydrogenase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
OGDH
Synonyms (NCBI Gene) Gene synonyms aliases
AKGDH, E1k, E1o, HsOGDH, KGD1, OGDC, OGDH-E1, OGDH2, OGDHD
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7p13
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes one subunit of the 2-oxoglutarate dehydrogenase complex. This complex catalyzes the overall conversion of 2-oxoglutarate (alpha-ketoglutarate) to succinyl-CoA and CO(2) during the Krebs cycle. The protein is located in the mitochondrial
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018112 hsa-miR-335-5p Microarray 18185580
MIRT028586 hsa-miR-30a-5p Proteomics 18668040
MIRT031751 hsa-miR-16-5p Proteomics 18668040
MIRT044084 hsa-miR-361-5p CLASH 23622248
MIRT701221 hsa-miR-4326 HITS-CLIP 23313552
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004591 Function Oxoglutarate dehydrogenase (succinyl-transferring) activity IBA 21873635
GO:0004591 Function Oxoglutarate dehydrogenase (succinyl-transferring) activity IDA 24495017, 29211711
GO:0004591 Function Oxoglutarate dehydrogenase (succinyl-transferring) activity ISS
GO:0005515 Function Protein binding IPI 32814053
GO:0005634 Component Nucleus IDA 29211711
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613022 8124 ENSG00000105953
Protein
UniProt ID Q02218
Protein name 2-oxoglutarate dehydrogenase complex component E1 (E1o) (HsOGDH) (OGDC-E1) (OGDH-E1) (EC 1.2.4.2) (2-oxoglutarate dehydrogenase, mitochondrial) (Alpha-ketoglutarate dehydrogenase) (Alpha-KGDH-E1) (Thiamine diphosphate (ThDP)-dependent 2-oxoglutarate dehyd
Protein function 2-oxoglutarate dehydrogenase (E1o) component of the 2-oxoglutarate dehydrogenase complex (OGDHC) (PubMed:24495017, PubMed:25210035, PubMed:28435050). Participates in the first step, rate limiting for the overall conversion of 2-oxoglutarate to s
PDB 3ERY , 7WGR , 8I0K
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16078 2-oxogl_dehyd_N 47 87 2-oxoglutarate dehydrogenase N-terminus Family
PF00676 E1_dh 256 582 Dehydrogenase E1 component Family
PF02779 Transket_pyr 649 866 Transketolase, pyrimidine binding domain Domain
PF16870 OxoGdeHyase_C 869 1014 2-oxoglutarate dehydrogenase C-terminal Family
Sequence
MFHLRTCAAKLRPLTASQTVKTFSQNRPAAARTFQQIRCYSAPVAAEPFLSGTSSNYVEE
MYCAWLENPKSVHKSWDIFFRNTNAGA
PPGTAYQSPLPLSRGSLAAVAHAQSLVEAQPNV
DKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSSVPADIISSTDKLGFYGLDES
DLDKVFHLPTTTFIGGQESALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWIRQKFET
PGIMQFTNEEKRTLLARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSEN
GVDYVIMGMPHRGRLNVLANVIRKELEQIFCQFDSKLEAADEGSGDVKYHLGMYHRRINR
VTDRNITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIV
YETFHLSDLPSYTTHGTVHVVVNNQIGFTTDPRMARSSPYPTDVARVVNAPIFHVNSDDP
EAVMYVCKVAAEWRSTFHKDVVVDLVCYRRNGHNEMDEPMFTQPLMYKQIRKQKPVLQKY
AELLVSQGVVNQPEYEEEISKYDKICEEAFARSKDEKILHIK
HWLDSPWPGFFTLDGQPR
SMSCPSTGLTEDILTHIGNVASSVPVENFTIHGGLSRILKTRGEMVKNRTVDWALAEYMA
FGSLLKEGIHIRLSGQDVERGTFSHRHHVLHDQNVDKRTCIPMNHLWPNQAPYTVCNSSL
SEYGVLGFELGFAMASPNALVLWEAQFGDFHNTAQCIIDQFICPGQAKWVRQNGIVLLLP
HGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEANFDINQLYDCNWVVVNCSTPGNFFH
VLRRQILLPFRKPLIIFTPKSLLRHP
EARSSFDEMLPGTHFQRVIPEDGPAAQNPENVKR
LLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPNAELAWCQEEH
KNQGYYDYVKPRLRTTISRAKPVWYAGRDPAAAPATGNKKTHLTELQRLLDTAF
DLDVFK
NFS
Sequence length 1023
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Citrate cycle (TCA cycle)
Lipoic acid metabolism
Metabolic pathways
Carbon metabolism
2-Oxocarboxylic acid metabolism
  Glyoxylate metabolism and glycine degradation
Lysine catabolism
Citric acid cycle (TCA cycle)
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Congenital lactic acidosis Congenital lactic acidosis rs119466000, rs797044605, rs863224052, rs863224053, rs863225443, rs863225444, rs863225445, rs769022521, rs1060499785, rs762254417, rs1553400685, rs1553403596, rs1553411748, rs1453934366, rs1160846305
View all (35 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Hydrocephalus Hydrocephalus rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546
Unknown
Disease term Disease name Evidence References Source
Oxoglutaricaciduria ALPHA-KETOGLUTARATE DEHYDROGENASE DEFICIENCY, oxoglutaricaciduria 27604308 ClinVar, GenCC
Metabolic Syndrome Metabolic Syndrome GWAS
Associations from Text Mining
Disease Name Relationship Type References
Acute Coronary Syndrome Stimulate 20226836
Alzheimer Disease Inhibit 8020988
Barth Syndrome Associate 30251684
Basal Ganglia Diseases Associate 26637184
Bipolar Disorder Associate 35821008
Carcinoma Renal Cell Associate 33564363
Colorectal Neoplasms Associate 28105922, 36879117
Demyelinating Diseases Associate 26637184
Depressive Disorder Major Associate 35821008
Glioblastoma Associate 27027236