Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4868
Gene name Gene Name - the full gene name approved by the HGNC.
NPHS1 adhesion molecule, nephrin
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
NPHS1
Synonyms (NCBI Gene) Gene synonyms aliases
CNF, NPHN, nephrin
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.12
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the immunoglobulin family of cell adhesion molecules that functions in the glomerular filtration barrier in the kidney. The gene is primarily expressed in renal tissues, and the protein is a type-1 transmembrane protein found
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs28939695 C>T Likely-benign, conflicting-interpretations-of-pathogenicity, benign, pathogenic Coding sequence variant, missense variant
rs34124941 ->C Likely-pathogenic Frameshift variant, coding sequence variant
rs35238405 T>C Conflicting-interpretations-of-pathogenicity, benign Coding sequence variant, missense variant
rs114203578 C>G,T Likely-pathogenic Coding sequence variant, missense variant
rs114849139 C>G,T Benign, conflicting-interpretations-of-pathogenicity, likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT676783 hsa-miR-125a-3p HITS-CLIP 23824327
MIRT676782 hsa-miR-764 HITS-CLIP 23824327
MIRT676781 hsa-miR-3934-5p HITS-CLIP 23824327
MIRT676780 hsa-miR-186-3p HITS-CLIP 23824327
MIRT676779 hsa-miR-150-5p HITS-CLIP 23824327
Transcription factors
Transcription factor Regulation Reference
WT1 Unknown 15504938;23768159
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 16525419, 21858180, 22662192
GO:0005886 Component Plasma membrane IDA 17464107
GO:0005886 Component Plasma membrane ISS
GO:0005886 Component Plasma membrane TAS
GO:0005887 Component Integral component of plasma membrane IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602716 7908 ENSG00000161270
Protein
UniProt ID O60500
Protein name Nephrin (Renal glomerulus-specific cell adhesion receptor)
Protein function Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle format
PDB 4ZRT
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07679 I-set 33 124 Immunoglobulin I-set domain Domain
PF08205 C2-set_2 138 228 CD80-like C2-set immunoglobulin domain Domain
PF08205 C2-set_2 242 328 CD80-like C2-set immunoglobulin domain Domain
PF08205 C2-set_2 344 428 CD80-like C2-set immunoglobulin domain Domain
PF08205 C2-set_2 444 538 CD80-like C2-set immunoglobulin domain Domain
PF08205 C2-set_2 548 634 CD80-like C2-set immunoglobulin domain Domain
PF13927 Ig_3 739 820 Domain
PF13927 Ig_3 838 924 Domain
PF00041 fn3 942 1025 Fibronectin type III domain Domain
Tissue specificity TISSUE SPECIFICITY: Specifically expressed in podocytes of kidney glomeruli.
Sequence
MALGTTLRASLLLLGLLTEGLAQLAIPASVPRGFWALPENLTVVEGASVELRCGVSTPGS
AVQWAKDGLLLGPDPRIPGFPRYRLEGDPARGEFHLHIEACDLSDDAEYECQVGRSEMGP
ELVS
PRVILSILVPPKLLLLTPEAGTMVTWVAGQEYVVNCVSGDAKPAPDITILLSGQTI
SDISANVNEGSQQKLFTVEATARVTPRSSDNRQLLVCEASSPALEAPI
KASFTVNVLFPP
GPPVIEWPGLDEGHVRAGQSLELPCVARGGNPLATLQWLKNGQPVSTAWGTEHTQAVARS
VLVMTVRPEDHGAQLSCEAHNSVSAGTQ
EHGITLQVTFPPSAIIILGSASQTENKNVTLS
CVSKSSRPRVLLRWWLGWRQLLPMEETVMDGLHGGHISMSNLTFLARREDNGLTLTCEAF
SEAFTKET
FKKSLILNVKYPAQKLWIEGPPEGQKLRAGTRVRLVCLAIGGNPEPSLMWYK
DSRTVTESRLPQESRRVHLGSVEKSGSTFSRELVLVTGPSDNQAKFTCKAGQLSASTQ
LA
VQFPPTNVTILANASALRPGDALNLTCVSVSSNPPVNLSWDKEGERLEGVAAPPRRAPFK
GSAAARSVLLQVSSRDHGQRVTCRAHSAELRETV
SSFYRLNVLYRPEFLGEQVLVVTAVE
QGEALLPVSVSANPAPEAFNWTFRGYRLSPAGGPRHRILSSGALHLWNVTRADDGLYQLH
CQNSEGTAEARLRLDVHYAPTIRALQDPTEVNVGGSVDIVCTVDANPILPGMFNWERLGE
DEEDQSLDDMEKISRGPTGRLRIHHAKLAQAGAYQCIVDN
GVAPPARRLLRLVVRFAPQV
EHPTPLTKVAAAGDSTSSATLHCRARGVPNIVFTWTKNGVPLDLQDPRYTEHTYHQGGVH
SSLLTIANVSAAQDYALFTCTATN
ALGSDQTNIQLVSISRPDPPSGLKVVSLTPHSVGLE
WKPGFDGGLPQRFCIRYEALGTPGFHYVDVVPPQATTFTLTGLQPSTRYRVWLLASNALG
DSGLA
DKGTQLPITTPGLHQPSGEPEDQLPTEPPSGPSGLPLLPVLFALGGLLLLSNASC
VGGVLWQRRLRRLAEGISEKTEAGSEEDRVRNEYEESQWTGERDTQSSTVSTTEAEPYYR
SLRDFSPQLPPTQEEVSYSRGFTGEDEDMAFPGHLYDEVERTYPPSGAWGPLYDEVQMGP
WDLHWPEDTYQDPRGIYDQVAGDLDTLEPDSLPFELRGHLV
Sequence length 1241
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Nephrin family interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Congenital nephrotic syndrome Congenital nephrotic syndrome, Finnish type rs386833898, rs762392183
Finnish congenital nephrotic syndrome Finnish congenital nephrotic syndrome rs28939378, rs137853042, rs267606919, rs267606917, rs140511594, rs386833863, rs386833864, rs386833865, rs386833866, rs386833867, rs386833869, rs386833871, rs386833870, rs386833872, rs386833874
View all (147 more)
23595123, 28780565, 19812541, 22009864, 19423745, 10652016, 23949594, 25501161, 25407002, 9660941, 16518627, 24742477, 25804400, 9915943, 24902943
View all (46 more)
Glomerulonephritis Glomerulonephritis, Glomerulonephritis, Minimal Change rs778043831 20962747, 11337370, 18256598
Hyperhomocysteinemia Hyperhomocysteinemia rs121964962, rs121964963, rs121964964, rs5742905, rs121964966, rs121964967, rs121964968, rs121964969, rs28934891, rs375846341, rs121964972, rs121964973, rs398123151, rs786204466, rs786204679
View all (66 more)
20116427
Unknown
Disease term Disease name Evidence References Source
Nephrotic Syndrome familial idiopathic steroid-resistant nephrotic syndrome GenCC
Oligodendroglioma Oligodendroglioma GWAS
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 33597637
Acute Kidney Injury Associate 12920248, 35891358
Albuminuria Associate 24103534, 28334007, 35451598
Arthritis Infectious Inhibit 18364044
Chromosome 22q11.2 Microduplication Syndrome Associate 31443662
Cicatrix Associate 20370455
Diabetes Mellitus Inhibit 15149332, 32099032
Diabetes Mellitus Type 2 Associate 22615747
Diabetic Nephropathies Associate 15149332, 18449463
Diabetic Nephropathies Inhibit 17264876, 19906946, 22615747, 35637650