Gene Gene information from NCBI Gene database.
Entrez ID 4860
Gene name Purine nucleoside phosphorylase
Gene symbol PNP
Synonyms (NCBI Gene)
NPPRO1837PUNP
Chromosome 14
Chromosome location 14q11.2
Summary This gene encodes an enzyme which reversibly catalyzes the phosphorolysis of purine nucleosides. The enzyme is trimeric, containing three identical subunits. Mutations which result in nucleoside phosphorylase deficiency result in defective T-cell (cell-me
SNPs SNP information provided by dbSNP.
12
SNP ID Visualize variation Clinical significance Consequence
rs104894450 A>G Pathogenic Missense variant, coding sequence variant
rs104894451 G>A,C Likely-pathogenic, pathogenic-likely-pathogenic Missense variant, coding sequence variant
rs104894452 A>G,T Pathogenic Missense variant, coding sequence variant
rs104894453 G>A Pathogenic Missense variant, coding sequence variant
rs104894454 G>C,T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
206
miRTarBase ID miRNA Experiments Reference
MIRT003765 hsa-miR-1-3p Microarray 15685193
MIRT003765 hsa-miR-1-3p Luciferase reporter assayWestern blot 22068816
MIRT003765 hsa-miR-1-3p Luciferase reporter assayWestern blot 22068816
MIRT006571 hsa-miR-133a-3p Luciferase reporter assayWestern blot 22068816
MIRT006571 hsa-miR-133a-3p Luciferase reporter assayWestern blot 22068816
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000255 Process Allantoin metabolic process IDA 6771276
GO:0001882 Function Nucleoside binding IDA 9305962
GO:0002060 Function Purine nucleobase binding IDA 9305962
GO:0003824 Function Catalytic activity IEA
GO:0004731 Function Purine-nucleoside phosphorylase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
164050 7892 ENSG00000198805
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P00491
Protein name Purine nucleoside phosphorylase (PNP) (EC 2.4.2.1) (Inosine phosphorylase) (Inosine-guanosine phosphorylase)
Protein function Catalyzes the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate (PubMed:23438750, PubMed:9305964). Preferentially acts
PDB 1M73 , 1PF7 , 1PWY , 1RCT , 1RFG , 1RR6 , 1RSZ , 1RT9 , 1ULA , 1ULB , 1V2H , 1V3Q , 1V41 , 1V45 , 1YRY , 2A0W , 2A0X , 2A0Y , 2OC4 , 2OC9 , 2ON6 , 2Q7O , 3BGS , 3D1V , 3GB9 , 3GGS , 3INY , 3K8O , 3K8Q , 3PHB , 4EAR , 4EB8 , 4ECE , 4GKA , 5ETJ , 5UGF , 7ZSL , 7ZSM , 7ZSN , 7ZSO , 7ZSP
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01048 PNP_UDP_1 26 280 Phosphorylase superfamily Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in red blood cells; overexpressed in red blood cells (cytoplasm) of patients with hereditary non-spherocytic hemolytic anemia of unknown etiology. {ECO:0000269|PubMed:22509282}.
Sequence
Sequence length 289
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Purine metabolism
Nicotinate and nicotinamide metabolism
Metabolic pathways
Nucleotide metabolism
  Neutrophil degranulation
Purine salvage
Purine catabolism
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
273
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely pathogenic; Pathogenic rs1026474882 RCV005898769
Purine-nucleoside phosphorylase deficiency Pathogenic; Likely pathogenic rs2139335365, rs867750505, rs2139338450, rs2139335095, rs2139331878, rs754734713, rs896550845, rs922257453, rs1368860049, rs1566525641, rs1882052778, rs772212348, rs104894453, rs104894454, rs104894450
View all (13 more)
RCV001384050
RCV001389833
RCV001387692
RCV001782663
RCV003631079
RCV002034794
RCV001956429
RCV003775503
RCV003041200
RCV003073277
RCV002588727
RCV003516361
RCV000015025
RCV000015026
RCV000015027
RCV000015028
RCV000015031
RCV000015032
RCV000015033
RCV000015034
RCV003630784
RCV003882258
RCV003990009
RCV000606768
RCV001824147
RCV000819434
RCV001068226
RCV001048764
Severe combined immunodeficiency disease Pathogenic; Likely pathogenic rs754734713, rs922257453, rs104894453, rs104894454, rs104894450, rs104894451, rs1026474882, rs1247497521 RCV005238007
RCV002469964
RCV005237380
RCV004700237
RCV006263627
RCV002298444
RCV003479170
RCV005438032
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Malignant lymphoma, large B-cell, diffuse Uncertain significance rs745437851 RCV005911041
PNP POLYMORPHISM Benign; Likely benign rs1049564 RCV000015029
PNP-related disorder Benign; Likely benign rs199866228, rs145773529 RCV003942450
RCV003935773
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acquired Immunodeficiency Syndrome Associate 3922455
Adenocarcinoma of Lung Associate 36778128
Agammaglobulinemia Associate 32695102
AIDS Dementia Complex Stimulate 3922455
Ataxia Telangiectasia Associate 32695102
Autoimmune Diseases Associate 33405358
Carcinoma Hepatocellular Associate 29718963
Drug Related Side Effects and Adverse Reactions Associate 12377188, 19388075
Drug Related Side Effects and Adverse Reactions Stimulate 29718963
Head and Neck Neoplasms Associate 36253876