Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
478
Gene name Gene Name - the full gene name approved by the HGNC.
ATPase Na+/K+ transporting subunit alpha 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ATP1A3
Synonyms (NCBI Gene) Gene synonyms aliases
AHC2, ATP1A1, CAPOS, DEE99, DYT12, RDP
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene belongs to the family of P-type cation transport ATPases, and to the subfamily of Na+/K+ -ATPases. Na+/K+ -ATPase is an integral membrane protein responsible for establishing and maintaining the electrochemical gradients o
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs80356532 A>G,T Pathogenic Coding sequence variant, missense variant
rs80356533 C>T Pathogenic Coding sequence variant, missense variant
rs80356535 A>C Pathogenic Coding sequence variant, missense variant
rs80356536 A>G Pathogenic Coding sequence variant, missense variant
rs80356537 C>A,G,T Pathogenic, likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT029518 hsa-miR-26b-5p Microarray 19088304
MIRT626514 hsa-miR-8485 HITS-CLIP 23824327
MIRT626513 hsa-miR-329-3p HITS-CLIP 23824327
MIRT626512 hsa-miR-362-3p HITS-CLIP 23824327
MIRT626511 hsa-miR-5003-5p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001540 Function Amyloid-beta binding IDA 26224839
GO:0001540 Function Amyloid-beta binding TAS 26871627
GO:0001917 Component Photoreceptor inner segment ISS
GO:0005391 Function P-type sodium:potassium-exchanging transporter activity IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
182350 801 ENSG00000105409
Protein
UniProt ID P13637
Protein name Sodium/potassium-transporting ATPase subunit alpha-3 (Na(+)/K(+) ATPase alpha-3 subunit) (EC 7.2.2.13) (Na(+)/K(+) ATPase alpha(III) subunit) (Sodium pump subunit alpha-3)
Protein function This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassi
PDB 8D3U , 8D3V , 8D3W , 8D3X , 8D3Y
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00690 Cation_ATPase_N 33 101 Cation transporter/ATPase, N-terminus Domain
PF00122 E1-E2_ATPase 153 344 Family
PF13246 Cation_ATPase 416 511 Family
PF00689 Cation_ATPase_C 789 998 Cation transporting ATPase, C-terminus Family
Sequence
MGDKKDDKDSPKKNKGKERRDLDDLKKEVAMTEHKMSVEEVCRKYNTDCVQGLTHSKAQE
ILARDGPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILC
FLAYGIQAGTEDDPSGDNL
YLGIVLAAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIREGEKMQVNAEEVVVGDL
VEIKGGDRVPADLRIISAHGCKVDNSSLTGESEPQTRSPDCTHDNPLETRNITFFSTNCV
EGTARGVVVATGDRTVMGRIATLASGLEVGKTPIAIEIEHFIQLITGVAVFLGVSFFILS
LILGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARK
NCLVKNLEAVETLGST
STICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGTSFDKSSHTWVALSHIAGLCNR
AVFKGGQDNIPVLKRDVAGDASESALLKCIELSSGSVKLMRERNKKVAEIPFNSTNKYQL
SIHETEDPNDNRYLLVMKGAPERILDRCSTI
LLQGKEQPLDEEMKEAFQNAYLELGGLGE
RVLGFCHYYLPEEQFPKGFAFDCDDVNFTTDNLCFVGLMSMIDPPRAAVPDAVGKCRSAG
IKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVIHGTDL
KDFTSEQIDEILQNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADI
GVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPF
LLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQPRNPRTDKLVNERLI
SMAYGQIGMIQALGGFFSYFVILAENGFLPGNLVGIRLNWDDRTVNDLEDSYGQQWTYEQ
RKVVEFTCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSY
CPGMDVALRMYPLKPSWWFCAFPYSFLIFVYDEIRKLI
LRRNPGGWVEKETYY
Sequence length 1013
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  cGMP-PKG signaling pathway
cAMP signaling pathway
Cardiac muscle contraction
Adrenergic signaling in cardiomyocytes
Cytoskeleton in muscle cells
Insulin secretion
Thyroid hormone synthesis
Thyroid hormone signaling pathway
Aldosterone synthesis and secretion
Aldosterone-regulated sodium reabsorption
Endocrine and other factor-regulated calcium reabsorption
Proximal tubule bicarbonate reclamation
Salivary secretion
Gastric acid secretion
Pancreatic secretion
Carbohydrate digestion and absorption
Protein digestion and absorption
Bile secretion
Mineral absorption
  Ion homeostasis
Ion transport by P-type ATPases
<
Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Alternating Hemiplegia alternating hemiplegia of childhood 2, alternating hemiplegia of childhood rs387907282, rs1064797245, rs1555865401, rs606231441, rs886041431, rs398122887, rs80356532, rs542652468, rs1599706522, rs782175860, rs606231437, rs80356537, rs267606670, rs1131691940, rs587777771
View all (2 more)
N/A
Cerebellar Ataxia-Areflexia-Pes Cavus-Optic Atrophy-Sensorineural Hearing Loss Syndrome cerebellar ataxia-areflexia-pes cavus-optic atrophy-sensorineural hearing loss syndrome rs1135401822, rs1135401821, rs587777771, rs863224847, rs782175860, rs864309572, rs606231435, rs1599705281 N/A
Developmental And Epileptic Encephalopathy Developmental and epileptic encephalopathy 99 rs606231443, rs886041396, rs782175860 N/A
Dystonia dystonia 12 rs869320661, rs387907281, rs1599706511, rs1064795234, rs80356532, rs1568853466, rs606231434, rs1555865401, rs1599725621, rs606231442, rs557052809, rs80356533, rs1599706613, rs387907282, rs1064797245
View all (30 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Encephalopathy encephalopathy, acute, infection-induced N/A N/A GenCC
Neurodevelopmental Disorders complex neurodevelopmental disorder N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adrenal Hyperplasia Congenital Associate 26410222, 35177115, 37482377
Alcohol Related Disorders Associate 25656163, 37043503
Alternating hemiplegia of childhood Associate 24468074, 24803225, 24842602, 25656163, 25996915, 26297560, 26400718, 26410222, 27146299, 27634470, 29269014, 29895895, 30891744, 31425744, 32348881
View all (8 more)
Aphasia Associate 26410222
Arrhythmias Cardiac Associate 34459253
Ataxia Associate 26990090, 29915382, 39712145
Ataxia Telangiectasia Like Disorder Associate 29915382
Atrioventricular Block Associate 32913013
Auditory neuropathy Associate 29184165, 38456936
Autistic Disorder Associate 34549350, 37482377