Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4763
Gene name Gene Name - the full gene name approved by the HGNC.
Neurofibromin 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
NF1
Synonyms (NCBI Gene) Gene synonyms aliases
NFNS, VRNF, WSS
Chromosome Chromosome number
17
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
17q11.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene product appears to function as a negative regulator of the ras signal transduction pathway. Mutations in this gene have been linked to neurofibromatosis type 1, juvenile myelomonocytic leukemia and Watson syndrome. The mRNA for this gene is subj
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs2230852 C>A,T Benign-likely-benign, pathogenic, benign Coding sequence variant, genic downstream transcript variant, stop gained, synonymous variant
rs112306990 T>A Conflicting-interpretations-of-pathogenicity, likely-benign, benign Coding sequence variant, missense variant
rs137854550 A>C,G Pathogenic, pathogenic-likely-pathogenic Coding sequence variant, missense variant, genic downstream transcript variant
rs137854551 C>A Pathogenic Coding sequence variant, missense variant, genic downstream transcript variant
rs137854552 C>A,T Pathogenic, likely-benign Coding sequence variant, stop gained, synonymous variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT005504 hsa-miR-10b-5p GFP reporter assay, Luciferase reporter assay, Microarray, qRT-PCR 20550523
MIRT005504 hsa-miR-10b-5p GFP reporter assay, Luciferase reporter assay, Microarray, qRT-PCR 20550523
MIRT007052 hsa-miR-370-3p Luciferase reporter assay 23077663
MIRT051457 hsa-let-7e-5p CLASH 23622248
MIRT041324 hsa-miR-193b-3p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
CREB1 Unknown 10435592
CTCF Unknown 21111075
FOXA1 Activation 8495744
GFI1 Unknown 14504408
IRF8 Activation 15371411
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000165 Process MAPK cascade IEA
GO:0000165 Process MAPK cascade ISS
GO:0001525 Process Angiogenesis IEA
GO:0001649 Process Osteoblast differentiation IEA
GO:0001649 Process Osteoblast differentiation ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613113 7765 ENSG00000196712
Protein
UniProt ID P21359
Protein name Neurofibromin (Neurofibromatosis-related protein NF-1) [Cleaved into: Neurofibromin truncated]
Protein function Stimulates the GTPase activity of Ras. NF1 shows greater affinity for Ras GAP, but lower specific activity. May be a regulator of Ras activity.
PDB 1NF1 , 2D4Q , 2E2X , 3P7Z , 3PEG , 3PG7 , 6OB2 , 6OB3 , 6V65 , 6V6F , 7MOC , 7MP5 , 7MP6 , 7PGP , 7PGQ , 7PGR , 7PGS , 7PGT , 7PGU , 7R03 , 7R04 , 8E20 , 8EDL , 8EDM , 8EDN , 8EDO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00616 RasGAP 1324 1451 GTPase-activator protein for Ras-like GTPase Family
PF13716 CRAL_TRIO_2 1602 1736 Divergent CRAL/TRIO domain Domain
Tissue specificity TISSUE SPECIFICITY: Detected in brain, peripheral nerve, lung, colon and muscle. {ECO:0000269|PubMed:8417346}.
Sequence
MAAHRPVEWVQAVVSRFDEQLPIKTGQQNTHTKVSTEHNKECLINISKYKFSLVISGLTT
ILKNVNNMRIFGEAAEKNLYLSQLIILDTLEKCLAGQPKDTMRLDETMLVKQLLPEICHF
LHTCREGNQHAAELRNSASGVLFSLSCNNFNAVFSRISTRLQELTVCSEDNVDVHDIELL
QYINVDCAKLKRLLKETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDEFTKLYQIPQT
DMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNKKLFL
DSLRKALAGHGGSRQLTESAAIACVKLCKASTYINWEDNSVIFLLVQSMVVDLKNLLFNP
SKPFSRGSQPADVDLMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHRIITN
SALDWWPKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAPSLTFKEKVTSLKFKEK
PTDLETRSYKYLLLSMVKLIHADPKLLLCNPRKQGPETQGSTAELITGLVQLVPQSHMPE
IAQEAMEALLVLHQLDSIDLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWL
REILICRNKFLLKNKQADRSSCHFLLFYGVGCDIPSSGNTSQMSMDHEELLRTPGASLRK
GKGNSSMDSAAGCSGTPPICRQAQTKLEVALYMFLWNPDTEAVLVAMSCFRHLCEEADIR
CGVDEVSVHNLLPNYNTFMEFASVSNMMSTGRAALQKRVMALLRRIEHPTAGNTEAWEDT
HAKWEQATKLILNYPKAKMEDGQAAESLHKTIVKRRMSHVSGGGSIDLSDTDSLQEWINM
TGFLCALGGVCLQQRSNSGLATYSPPMGPVSERKGSMISVMSSEGNADTPVSKFMDRLLS
LMVCNHEKVGLQIRTNVKDLVGLELSPALYPMLFNKLKNTISKFFDSQGQVLLTDTNTQF
VEQTIAIMKNLLDNHTEGSSEHLGQASIETMMLNLVRYVRVLGNMVHAIQIKTKLCQLVE
VMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQAADDDVKCLTRDLDQASMEAVVSLL
AGLPLQPEEGDGVELMEAKSQLFLKYFTLFMNLLNDCSEVEDESAQTGGRKRGMSRRLAS
LRHCTVLAMSNLLNANVDSGLMHSIGLGYHKDLQTRATFMEVLTKILQQGTEFDTLAETV
LADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNM
FSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFE
VDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQATCHSLLNKA
TVKEKKENKKSVVSQRFPQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPRIERGLK
LMSKILQSIAN
HVLFTKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFIS
DGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEHKPVADTHWS
SLNLTSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQING
DLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIY
NCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEED
LKVF
HNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEIEEICLVDENQFT
LTIANQGTPLTFMHQECEAIVQSIIHIRTRWELSQPDSIPQHTKIRPKDVPGTLLNIALL
NLGSSDPSLRSAAYNLLCALTCTFNLKIEGQLLETSGLCIPANNTLFIVSISKTLAANEP
HLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNLVRFCKHNDDAKRQRVTAILDKLIT
MTINEKQMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALAS
GNVKLVSSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHL
PYLFHVVTFLVATGPLSLRASTHGLVINIIHSLCTCSQLHFSEETKQVLRLSLTEFSLPK
FYLLFGISKVKSAAVIAFRSSYRDRSFSPGSYERETFALTSLETVTEALLEIMEACMRDI
PTCKWLDQWTELAQRFAFQYNPSLQPRALVVFGCISKRVSHGQIKQIIRILSKALESCLK
GPDTYNSQVLIEATVIALTKLQPLLNKDSPLHKALFWVAVAVLQLDEVNLYSAGTALLEQ
NLHTLDSLRIFNDKSPEEVFMAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRH
PSPAIVARTVRILHTLLTLVNKHRNCDKFEVNTQSVAYLAALLTVSEEVRSRCSLKHRKS
LLLTDISMENVPMDTYPIHHGDPSYRTLKETQPWSSPKGSEGYLAATYPTVGQTSPRARK
SMSLDMGQPSQANTKKLLGTRKSFDHLISDTKAPKRQEMESGITTPPKMRRVAETDYEME
TQRISSSQQHPHLRKVSVSESNVLLDEEVLTDPKIQALLLTVLATLVKYTTDEFDQRILY
EYLAEASVVFPKVFPVVHNLLDSKINTLLSLCQDPNLLNPIHGIVQSVVYHEESPPQYQT
SYLQSFGFNGLWRFAGPFSKQTQIPDYAELIVKFLDALIDTYLPGIDEETSEESLLTPTS
PYPPALQSQLSITANLNLSNSMTSLATSQHSPGIDKENVELSPTTGHCNSGRTRHGSASQ
VQKQRSAGSFKRNSIKKIV
Sequence length 2839
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  EGFR tyrosine kinase inhibitor resistance
MAPK signaling pathway
Ras signaling pathway
  Regulation of RAS by GAPs
RAS signaling downstream of NF1 loss-of-function variants
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Cafe-au-lait spot cafe au lait spots, multiple rs1555613206, rs1555608663, rs1057518792 N/A
Myelomonocytic Leukemia juvenile myelomonocytic leukemia rs1057518807, rs1555614453, rs1060500387, rs1597858594, rs1555614354, rs1567817974, rs1555613543, rs771115661, rs2066874267, rs786203950, rs1060500245, rs1057518904, rs1567845945, rs1555618572, rs1597866846
View all (57 more)
N/A
neoplasm Neoplasm rs137854565, rs863224491, rs1060500345, rs587781807, rs1555610903, rs1598173737, rs1057518134, rs797044942, rs1555615472, rs137854562, rs1131691082, rs1064794276, rs1060500352 N/A
Neurofibroma neurofibroma rs1597715477, rs863224491, rs1555614011, rs1597859854, rs786202782, rs1597851255, rs1597862012 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Acute Myeloid Leukemia Acute myeloid leukemia Reduced expression levels of LZTR1, NF1, TSC1, and TSC2 correlate with reduced sensitivity to sorafenib in samples from patients with acute myeloid leukemia and deficiency results in hyperactivation of MAPK or MTOR pathways in acute myeloid leukemia cells 33375770 CBGDA
autism spectrum disorder Autism spectrum disorder N/A N/A ClinVar
Diabetes Type 2 diabetes N/A N/A GWAS
hereditary cancer Hereditary cancer N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Pain Associate 38469797
Achalasia Addisonianism Alacrimia syndrome Stimulate 31301733
Acromegaly Associate 34334593
Adenocarcinoma Associate 31208361, 31747302, 33500480, 38469797
Adenocarcinoma of Lung Associate 18948947, 25079552, 27151654, 31199580, 32083571, 34887322, 35702826
Adenomatous Polyposis Coli Associate 34986841
Adrenocortical Carcinoma Associate 25078331, 27165744
Alagille Syndrome Associate 33910856
Alopecia Neurologic Defects and Endocrinopathy Syndrome Associate 34334593
Alternating hemiplegia of childhood Associate 31462295