Gene Gene information from NCBI Gene database.
Entrez ID 4756
Gene name Neogenin 1
Gene symbol NEO1
Synonyms (NCBI Gene)
IGDCC2NGNNTN1R2
Chromosome 15
Chromosome location 15q24.1
Summary This gene encodes a cell surface protein that is a member of the immunoglobulin superfamily. The encoded protein consists of four N-terminal immunoglobulin-like domains, six fibronectin type III domains, a transmembrane domain and a C-terminal internal do
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs483352721 C>G Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
297
miRTarBase ID miRNA Experiments Reference
MIRT016178 hsa-miR-590-3p Sequencing 20371350
MIRT028322 hsa-miR-32-5p Sequencing 20371350
MIRT047083 hsa-miR-183-5p CLASH 23622248
MIRT044583 hsa-miR-320a CLASH 23622248
MIRT041971 hsa-miR-484 CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
35
GO ID Ontology Definition Evidence Reference
GO:0001764 Process Neuron migration IBA
GO:0005515 Function Protein binding IPI 18335997, 22084112
GO:0005654 Component Nucleoplasm IDA
GO:0005794 Component Golgi apparatus IDA
GO:0005886 Component Plasma membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601907 7754 ENSG00000067141
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92859
Protein name Neogenin (Immunoglobulin superfamily DCC subclass member 2)
Protein function Multi-functional cell surface receptor regulating cell adhesion in many diverse developmental processes, including neural tube and mammary gland formation, myogenesis and angiogenesis. Receptor for members of the BMP, netrin, and repulsive guida
PDB 1X5F , 1X5G , 1X5H , 1X5I , 1X5J , 1X5K , 3P4L
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13895 Ig_2 55 148 Immunoglobulin domain Domain
PF13927 Ig_3 152 225 Domain
PF07679 I-set 249 337 Immunoglobulin I-set domain Domain
PF07679 I-set 341 427 Immunoglobulin I-set domain Domain
PF00041 fn3 440 525 Fibronectin type III domain Domain
PF00041 fn3 540 621 Fibronectin type III domain Domain
PF00041 fn3 635 721 Fibronectin type III domain Domain
PF00041 fn3 740 820 Fibronectin type III domain Domain
PF00041 fn3 855 942 Fibronectin type III domain Domain
PF00041 fn3 956 1044 Fibronectin type III domain Domain
PF06583 Neogenin_C 1158 1461 Neogenin C-terminus Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed and also in cancer cell lines.
Sequence
MAAERGARRLLSTPSFWLYCLLLLGRRAPGAAAARSGSAPQSPGASIRTFTPFYFLVEPV
DTLSVRGSSVILNCSAYSEPSPKIEWKKDGTFLNLVSDDRRQLLPDGSLFISNVVHSKHN
KPDEGYYQCVATVESLGTIISRTAKLIV
AGLPRFTSQPEPSSVYAGNNAILNCEVNADLV
PFVRWEQNRQPLLLDDRVIKLPSGMLVISNATEGDGGLYRCVVES
GGPPKYSDEVELKVL
PDPEVISDLVFLKQPSPLVRVIGQDVVLPCVASGLPTPTIKWMKNEEALDTESSERLVLL
AGGSLEISDVTEDDAGTYFCIADNGNETIEAQAELTV
QAQPEFLKQPTNIYAHESMDIVF
ECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQ
AGAQLII
LEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKE
GIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESS
APLRVETQPEVQLPG
PAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLK
KYTEYSFRVVAYNKHGPGVST
PDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPA
TQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPA
T
DWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSP
HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIP
LYESAVTRPHTDTSEVDLFV
INAPYTPVPDPTPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP
ANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWS
MTAHGTTFELVPTSPPKD
VTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQ
ELTLDTPYYFKIQARNSKGMGPMS
EAVQFRTPKADSSDKMPNDQASGSGGKGSRLPDLGS
DYKPPMSGSNSPHGSPTSPLDSNMLLVIIVSVGVITIVVVVIIAVFCTRRTTSHQKKKRA
ACKSVNGSHKYKGNSKDVKPPDLWIHHERLELKPIDKSPDPNPIMTDTPIPRNSQDITPV
DNSMDSNIHQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDSQPPQPVISAHPIHSLDN
PHHHFHSSSLASPARSHLYHPGSPWPIGTSMSLSDRANSTESVRNTPSTDTMPASSSQTC
CTDHQDPEGATSSSYLASSQEEDSGQSLPTAHVRPSHPLKSFAVPAIPPPGPPTYDPALP
STPLLSQQALNHHIHSVKTASIGTLGRSRPPMPVVVPSAPEVQETTRMLEDSESSYEPDE
LTKEMAHLEGLMKDLNAITTA
Sequence length 1461
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  TGF-beta signaling pathway
Axon guidance
Cell adhesion molecules
 
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
38
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely benign rs145921136 RCV005907722
Cholangiocarcinoma Benign rs8035499 RCV005906413
Clear cell carcinoma of kidney Uncertain significance rs367758397 RCV005926882
Familial cancer of breast Benign rs8035499 RCV005906410
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Arrhythmogenic Right Ventricular Dysplasia Stimulate 31843279
Breast Neoplasms Associate 16324219, 25416629
Calvarial hyperostosis Associate 31819067
Carcinogenesis Associate 16324219
Carcinoma Ductal Associate 16324219
Colorectal Neoplasms Inhibit 25416629
Colorectal Neoplasms Associate 30858446
Glioblastoma Associate 21980448
Glioma Inhibit 22666451
Inflammation Associate 36297056