Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4645
Gene name Gene Name - the full gene name approved by the HGNC.
Myosin VB
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
MYO5B
Synonyms (NCBI Gene) Gene synonyms aliases
DIAR2, MVID1, PFIC10
Disease Acronyms (UniProt) Disease acronyms from UniProt database
DIAR2, PFIC10
Chromosome Chromosome number
18
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
18q21.1
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene, together with other proteins, may be involved in plasma membrane recycling. Mutations in this gene are associated with microvillous inclusion disease. [provided by RefSeq, Sep 2009]
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121908103 A>C,G Pathogenic Missense variant, coding sequence variant
rs121908104 C>T Pathogenic Stop gained, coding sequence variant
rs121908105 G>A,C,T Pathogenic Missense variant, coding sequence variant
rs121908106 G>A Pathogenic Missense variant, coding sequence variant
rs192207329 C>T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT027199 hsa-miR-103a-3p Sequencing 20371350
MIRT032002 hsa-miR-16-5p Sequencing 20371350
MIRT656022 hsa-miR-1304-3p HITS-CLIP 23824327
MIRT656021 hsa-miR-1229-3p HITS-CLIP 23824327
MIRT656020 hsa-miR-587 HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000146 Function Microfilament motor activity IBA 21873635
GO:0000146 Function Microfilament motor activity TAS
GO:0003091 Process Renal water homeostasis TAS
GO:0005515 Function Protein binding IPI 19542231, 25416956
GO:0005516 Function Calmodulin binding IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606540 7603 ENSG00000167306
Protein
UniProt ID Q9ULV0
Protein name Unconventional myosin-Vb
Protein function May be involved in vesicular trafficking via its association with the CART complex. The CART complex is necessary for efficient transferrin receptor recycling but not for EGFR degradation. Required in a complex with RAB11A and RAB11FIP2 for the
PDB 4J5M , 4LNZ , 4LWZ , 4LX0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00063 Myosin_head 71 749 Myosin head (motor domain) Domain
PF00612 IQ 765 785 IQ calmodulin-binding motif Motif
PF00612 IQ 788 808 IQ calmodulin-binding motif Motif
PF00612 IQ 813 833 IQ calmodulin-binding motif Motif
PF00612 IQ 836 856 IQ calmodulin-binding motif Motif
PF00612 IQ 861 881 IQ calmodulin-binding motif Motif
PF00612 IQ 884 904 IQ calmodulin-binding motif Motif
PF01843 DIL 1680 1783 DIL domain Family
Sequence
MSVGELYSQCTRVWIPDPDEVWRSAELTKDYKEGDKSLQLRLEDETILEYPIDVQRNQLP
FLRNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYEQLPIYG
QDVIYTYSGQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYF
ATVGGSASETNIEEKVLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFDKRYHIIGANMR
TYLLEKSRVVFQADDERNYHIFYQLCAAAGLPEFKELALTSAEDFFYTSQGGDTSIEGVD
DAEDFEKTRQAFTLLGVKESHQMSIFKIIASILHLGSVAIQAERDGDSCSISPQDVYLSN
FCRLLGVEHSQMEHWLCHRKLVTTSETYVKTMSLQQVINARNALAKHIYAQLFGWIVEHI
NKALHTSLKQHSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNSHVFKLEQEEYMK
EQIPWTLIDFYDNQPCIDLIEAKLGILDLLDEECKVPKGTDQNWAQKLYDRHSSSQHFQK
PRMSNTAFIIVHFADKVEYLSDGFLEKNRDTVYEEQINILKASKFPLVADLFHDDKDPVP
ATTPGKGSSSKISVRSARPPMKVSNKEHKKTVGHQFRTSLHLLMETLNATTPHYVRCIKP
NDEKLPFHFDPKRAVQQLRACGVLETIRISAAGYPSRWAYHDFFNRYRVLVKKRELANTD
KKAICRSVLENLIKDPDKFQFGRTKIFFR
AGQVAYLEKLRADKFRTATIMIQKTVRGWLQ
KVKYH
RLKGATLTLQRYCRGHLARRLAEHLRRIRAAVVLQKHYRMQRARQAYQRVRRAAV
VIQAFTRAMFVRRTYR
QVLMEHKATTIQKHVRGWMARRHFQRLRDAAIVIQCAFRMLKAR
RELK
ALRIEARSAEHLKRLNVGMENKVVQLQRKIDEQNKEFKTLSEQLSVTTSTYTMEVE
RLKKELVHYQQSPGEDTSLRLQEEVESLRTELQRAHSERKILEDAHSREKDELRKRVADL
EQENALLKDEKEQLNNQILCQSKDEFAQNSVKENLMKKELEEERSRYQNLVKEYSQLEQR
YDNLRDEMTIIKQTPGHRRNPSNQSSLESDSNYPSISTSEIGDTEDALQQVEEIGLEKAA
MDMTVFLKLQKRVRELEQERKKLQVQLEKREQQDSKKVQAEPPQTDIDLDPNADLAYNSL
KRQELESENKKLKNDLNELRKAVADQATQNNSSHGSPDSYSLLLNQLKLAHEELEVRKEE
VLILRTQIVSADQRRLAGRNAEPNINARSSWPNSEKHVDQEDAIEAYHGVCQTNSKTEDW
GYLNEDGELGLAYQGLKQVARLLEAQLQAQSLEHEEEVEHLKAQLEALKEEMDKQQQTFC
QTLLLSPEAQVEFGVQQEISRLTNENLDLKELVEKLEKNERKLKKQLKIYMKKAQDLEAA
QALAQSERKRHELNRQVTVQRKEKDFQGMLEYHKEDEALLIRNLVTDLKPQMLSGTVPCL
PAYILYMCIRHADYTNDDLKVHSLLTSTINGIKKVLKKHNDDFEMTSFWLSNTCRLLHCL
KQYSGDEGFMTQNTAKQNEHCLKNFDLTEYRQVLSDLSIQIYQQLIKIAEGVLQPMIVSA
MLENESIQGLSGVKPTGYRKRSSSMADGDNSYCLEAIIRQMNAFHTVMCDQGLDPEIILQ
VFKQLFYMINAVTLNNLLLRKDVCSWSTGMQLRYNISQLEEWLRGRNLHQSGAVQTMEPL
IQAAQLLQLKKKTQEDAEAICSLCTSLSTQQIVKILNLYTPLN
EFEERVTVAFIRTIQAQ
LQERNDPQQLLLDAKHMFPVLFPFNPSSLTMDSIHIPACLNLEFLNEV
Sequence length 1848
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Motor proteins
Pathogenic Escherichia coli infection
  Vasopressin regulates renal water homeostasis via Aquaporins
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 18724368
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Intrahepatic cholestasis Cholestasis, progressive familial intrahepatic 1, MYO5B-related progressive familial intrahepatic cholestasis, Progressive familial intrahepatic cholestasis type 1 rs121918299, rs80338722, rs80338725, rs80338719, rs80338723, rs80338726, rs72549401, rs11568372, rs1553469602, rs387907317, rs387906354, rs752919965, rs72549397, rs111033609, rs121909099
View all (111 more)
27532546
Myopia Myopia rs387907109, rs146936371, rs587776903, rs786205127, rs398122836, rs199624584, rs587777625, rs786205216, rs758872875, rs764211125, rs1135402746, rs765658563, rs1555941129, rs1555941116, rs199923805
View all (6 more)
27182965
Unknown
Disease term Disease name Evidence References Source
Intrahepatic Cholestasis progressive familial intrahepatic cholestasis type 1 GenCC
Hypertension Hypertension GWAS
Multiple Sclerosis Multiple Sclerosis GWAS
Associations from Text Mining
Disease Name Relationship Type References
Atrophy Associate 24413175
Autoimmune enteropathy Associate 35421597
Bipolar Disorder Associate 18317468, 21480485
Cholestasis Associate 28027573, 31750554, 35129155, 36705120, 39182182, 40225142
Cholestasis Intrahepatic Associate 35129155, 35421597
Cholestasis progressive familial intrahepatic 1 Associate 31750554, 39182182
Colorectal Neoplasms Inhibit 29024942
Cytomegalovirus Infections Associate 34815247
Death Associate 27229121
Diarrhea Associate 21199752, 21206382, 29218485, 34503561, 35421597