Gene Gene information from NCBI Gene database.
Entrez ID 4312
Gene name Matrix metallopeptidase 1
Gene symbol MMP1
Synonyms (NCBI Gene)
CLGCLGN
Chromosome 11
Chromosome location 11q22.2
Summary This gene encodes a member of the peptidase M10 family of matrix metalloproteinases (MMPs). Proteins in this family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and t
miRNA miRNA information provided by mirtarbase database.
153
miRTarBase ID miRNA Experiments Reference
MIRT000136 hsa-miR-222-3p FlowLuciferase reporter assayMicroarrayqRT-PCRWestern blot 19487542
MIRT006062 hsa-miR-203a-3p ELISAqRT-PCR 21279994
MIRT006062 hsa-miR-203a-3p ELISAqRT-PCR 21279994
MIRT006062 hsa-miR-203a-3p ELISAqRT-PCR 21279994
MIRT006062 hsa-miR-203a-3p ELISAqRT-PCR 21279994
Transcription factors Transcription factors information provided by TRRUST V2 database.
29
Transcription factor Regulation Reference
BACH1 Activation 21873975
CEBPB Unknown 19723873
CITED2 Repression 12960175
ETS1 Activation 15972796;16278291;17283078
ETS1 Unknown 10949659;11556732;21244711
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0004175 Function Endopeptidase activity IDA 19022250
GO:0004175 Function Endopeptidase activity IEA
GO:0004222 Function Metalloendopeptidase activity IBA
GO:0004222 Function Metalloendopeptidase activity IDA 9920899
GO:0004222 Function Metalloendopeptidase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
120353 7155 ENSG00000196611
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P03956
Protein name Interstitial collagenase (EC 3.4.24.7) (Fibroblast collagenase) (Matrix metalloproteinase-1) (MMP-1) [Cleaved into: 22 kDa interstitial collagenase; 27 kDa interstitial collagenase]
Protein function Cleaves collagens of types I, II, and III at one site in the helical domain. Also cleaves collagens of types VII and X (PubMed:1645757, PubMed:2153297, PubMed:2557822). In case of HIV infection, interacts and cleaves the secreted viral Tat prote
PDB 1AYK , 1CGE , 1CGF , 1CGL , 1HFC , 1SU3 , 2AYK , 2CLT , 2J0T , 2TCL , 3AYK , 3SHI , 4AUO , 4AYK , 966C
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01471 PG_binding_1 27 87 Putative peptidoglycan binding domain Domain
PF00413 Peptidase_M10 108 261 Matrixin Domain
PF00045 Hemopexin 284 326 Hemopexin Repeat
PF00045 Hemopexin 328 372 Hemopexin Repeat
PF00045 Hemopexin 377 424 Hemopexin Repeat
PF00045 Hemopexin 426 466 Hemopexin Repeat
Sequence
Sequence length 469
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  PPAR signaling pathway
IL-17 signaling pathway
Relaxin signaling pathway
Coronavirus disease - COVID-19
Pathways in cancer
Bladder cancer
Rheumatoid arthritis
Lipid and atherosclerosis
  Collagen degradation
Degradation of the extracellular matrix
Activation of Matrix Metalloproteinases
Basigin interactions
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Interleukin-4 and Interleukin-13 signaling
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
21
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Benign rs1051121 RCV005898313
Cholangiocarcinoma Benign rs17882844, rs1051121 RCV005923641
RCV005898316
COPD, severe early onset Likely benign rs143788145 RCV002501473
Gastric cancer Benign rs1051121 RCV005898314
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Achondrogenesis type 2 Associate 31277141
Acidosis Stimulate 35414794
Acne Vulgaris Associate 16528362, 18563181
Actinic cheilitis Associate 26515234
Acute Coronary Syndrome Associate 29044936
Adenocarcinoma Associate 19321798, 20946664, 21143918, 27460729, 30670912, 33905434
Adenocarcinoma Stimulate 22422400
Adenocarcinoma Mucinous Associate 29463039
Adenocarcinoma of Lung Associate 29463039, 33487115
Adenocarcinoma Scirrhous Associate 8766524