Gene Gene information from NCBI Gene database.
Entrez ID 4210
Gene name MEFV innate immunity regulator, pyrin
Gene symbol MEFV
Synonyms (NCBI Gene)
FMFMEFPAANDTRIM20
Chromosome 16
Chromosome location 16p13.3
Summary This gene encodes a protein, also known as pyrin or marenostrin, that is an important modulator of innate immunity. Mutations in this gene are associated with Mediterranean fever, a hereditary periodic fever syndrome. [provided by RefSeq, Jul 2008]
SNPs SNP information provided by dbSNP.
54
SNP ID Visualize variation Clinical significance Consequence
rs3743930 C>A,G,T Conflicting-interpretations-of-pathogenicity, uncertain-significance, pathogenic Missense variant, stop gained, non coding transcript variant, intron variant, coding sequence variant
rs11466016 C>A Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, non coding transcript variant, coding sequence variant
rs11466018 A>G Conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, non coding transcript variant, intron variant, coding sequence variant
rs11466023 G>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, non coding transcript variant, coding sequence variant
rs11466024 C>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
378
miRTarBase ID miRNA Experiments Reference
MIRT733341 hsa-miR-197-3p ELISAqRT-PCR 33436947
MIRT1142346 hsa-miR-1827 CLIP-seq
MIRT1142347 hsa-miR-3122 CLIP-seq
MIRT1142348 hsa-miR-3147 CLIP-seq
MIRT1142349 hsa-miR-3160-3p CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
E2F1 Activation 20805247
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
49
GO ID Ontology Definition Evidence Reference
GO:0001726 Component Ruffle IEA
GO:0002221 Process Pattern recognition receptor signaling pathway NAS 29196474
GO:0002376 Process Immune system process IEA
GO:0003779 Function Actin binding IDA 11468188
GO:0003779 Function Actin binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608107 6998 ENSG00000103313
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O15553
Protein name Pyrin (Marenostrin)
Protein function Involved in the regulation of innate immunity and the inflammatory response in response to IFNG/IFN-gamma (PubMed:10807793, PubMed:11468188, PubMed:16037825, PubMed:16785446, PubMed:17431422, PubMed:17964261, PubMed:18577712, PubMed:19109554, Pu
PDB 2MPC , 2WL1 , 4CG4 , 8C28 , 8C2Y , 8C30 , 8SDJ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02758 PYRIN 8 84 PAAD/DAPIN/Pyrin domain Domain
PF00643 zf-B_box 370 412 B-box zinc finger Domain
PF13765 PRY 600 648 SPRY-associated domain Family
PF00622 SPRY 652 771 SPRY domain Family
Tissue specificity TISSUE SPECIFICITY: Expressed in peripheral blood leukocytes, particularly in mature granulocytes and to a lesser extent in monocytes but not in lymphocytes. Detected in spleen, lung and muscle, probably as a result of leukocyte infiltration in these tiss
Sequence
MAKTPSDHLLSTLEELVPYDFEKFKFKLQNTSVQKEHSRIPRSQIQRARPVKMATLLVTY
YGEEYAVQLTLQVLRAINQRLLAE
ELHRAAIQEYSTQENGTDDSAASSSLGENKPRSLKT
PDHPEGNEGNGPRPYGGGAASLRCSQPEAGRGLSRKPLSKRREKASEGLDAQGKPRTRSP
ALPGGRSPGPCRALEGGQAEVRLRRNASSAGRLQGLAGGAPGQKECRPFEVYLPSGKMRP
RSLEVTISTGEKAPANPEILLTLEEKTAANLDSATEPRARPTPDGGASADLKEGPGNPEH
SVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQASGSRSPGCPRCQDSHE
RKSPGSLSPQPLPQCKRHLKQVQLLFCEDHDEPICLICSLSQEHQGHRVRPIEEVALEHK
KKIQKQLEHLKKLRKSGEEQRSYGEEKAVSFLKQTEALKQRVQRKLEQVYYFLEQQEHFF
VASLEDVGQMVGQIRKAYDTRVSQDIALLDALIGELEAKECQSEWELLQDIGDILHRAKT
VPVPEKWTTPQEIKQKIQLLHQKSEFVEKSTKYFSETLRSEMEMFNVPELIGAQAHAVNV
ILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSF
LSGRRYWEVEVG
DKTAWILGACKTSISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRLLIKEPPKRVGI
FVDYRVGSISFYNVTARSHIYTFASCSFSGPLQPIFSPGTRDGGKNTAPLT
ICPVGGQGP
D
Sequence length 781
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  NOD-like receptor signaling pathway
Cytosolic DNA-sensing pathway
Yersinia infection
  The NLRP3 inflammasome
Purinergic signaling in leishmaniasis infection
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1853
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute febrile neutrophilic dermatosis Likely pathogenic; Pathogenic rs104895127, rs1179528365, rs886082025, rs61752717, rs28940578, rs28940579, rs104895097, rs28940580, rs104895085, rs1959081392 RCV005016370
RCV001535879
RCV001535884
RCV001197704
RCV005016225
RCV001535867
RCV001536101
RCV005016229
RCV005016230
RCV001197705
RCV001174525
Autoinflammatory syndrome Likely pathogenic; Pathogenic rs104895093, rs768066753, rs61752717, rs28940578, rs28940579, rs104895097, rs28940580 RCV002262640
RCV002262054
RCV002262539
RCV002262540
RCV002262541
RCV002262548
RCV002262549
RCV002262586
Behcet disease Pathogenic rs751454741 RCV000495851
Familial Mediterranean fever Likely pathogenic; Pathogenic rs104895093, rs104895127, rs1179528365, rs886082025, rs751375381, rs61752717, rs28940578, rs28940579, rs104895097, rs28940580, rs104895085, rs1048716809, rs1959114278, rs1959115414 RCV000083737
RCV000083792
RCV001535879
RCV001535884
RCV002222938
RCV000002647
RCV000002648
RCV000002649
RCV000002658
RCV000002659
RCV000002662
RCV003605614
RCV004576149
RCV000030179
RCV001240947
RCV001247730
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal cardiovascular system morphology Conflicting classifications of pathogenicity rs104895094 RCV001270033
Central core myopathy Conflicting classifications of pathogenicity rs104895140 RCV001258254
Cervical cancer Conflicting classifications of pathogenicity; Benign; Likely benign rs77086855, rs11466024, rs2075849, rs75977701 RCV005887688
RCV005887216
RCV005893832
RCV005888747
Cholangiocarcinoma Conflicting classifications of pathogenicity rs11466024 RCV005887220
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
AA amyloidosis Associate 17469185, 23461592, 37738242
Abdomen Acute Associate 19820675
Abdominal Injuries Associate 35812376
Abdominal Pain Associate 15458961, 21978701, 25073670, 25626331, 26759267, 31627741, 31804137, 34098104
Acute Disease Inhibit 17195238
Amyloidosis Associate 11156548, 12687559, 12929299, 15018633, 15458961, 19797919, 22318840, 22705602, 25394530, 28781304, 28859624, 31603074, 34692839
Amyloidosis familial visceral Associate 10364520, 11017802, 12687559, 17469185, 19888326, 23038988, 23907647, 28859624
Arthralgia Associate 15458961, 18300119, 26759267, 27026266, 27030597, 31804137, 35812376
Arthritis Associate 10364520, 15458961, 18300119, 23206577, 23907647, 26759267, 29642170, 30299251, 31171010, 32778116, 34098104
Arthritis Juvenile Associate 18576390, 23907647, 30847869, 30940621, 32398039, 32894151