Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4069
Gene name Gene Name - the full gene name approved by the HGNC.
Lysozyme
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LYZ
Synonyms (NCBI Gene) Gene synonyms aliases
AMYLD5, LYZF1, LZM
Disease Acronyms (UniProt) Disease acronyms from UniProt database
AMYLD5
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q15
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes human lysozyme, whose natural substrate is the bacterial cell wall peptidoglycan (cleaving the beta[1-4]glycosidic linkages between N-acetylmuramic acid and N-acetylglucosamine). Lysozyme is one of the antimicrobial agents found in human
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121913547 T>C Pathogenic Coding sequence variant, missense variant
rs121913549 T>A Pathogenic Coding sequence variant, missense variant
rs387906535 G>C Pathogenic Missense variant, coding sequence variant
rs387906536 T>A,C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT030049 hsa-miR-26b-5p Microarray 19088304
MIRT696225 hsa-miR-508-5p HITS-CLIP 23313552
MIRT696224 hsa-miR-3613-3p HITS-CLIP 23313552
MIRT696223 hsa-miR-6849-3p HITS-CLIP 23313552
MIRT696222 hsa-miR-939-3p HITS-CLIP 23313552
Transcription factors
Transcription factor Regulation Reference
SP1 Unknown 15504356
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001895 Process Retina homeostasis HEP 23580065
GO:0003796 Function Lysozyme activity IBA 21873635
GO:0003796 Function Lysozyme activity TAS 2829884
GO:0005576 Component Extracellular region TAS
GO:0005615 Component Extracellular space HDA 16502470, 22664934, 23580065
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
153450 6740 ENSG00000090382
Protein
UniProt ID P61626
Protein name Lysozyme C (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)
Protein function Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents.
PDB 133L , 134L , 1B5U , 1B5V , 1B5W , 1B5X , 1B5Y , 1B5Z , 1B7L , 1B7M , 1B7N , 1B7O , 1B7P , 1B7Q , 1B7R , 1B7S , 1BB3 , 1BB4 , 1BB5 , 1C43 , 1C45 , 1C46 , 1C7P , 1CJ6 , 1CJ7 , 1CJ8 , 1CJ9 , 1CKC , 1CKD , 1CKF , 1CKG , 1CKH , 1D6P , 1D6Q , 1DI3 , 1DI4 , 1DI5 , 1EQ4 , 1EQ5 , 1EQE , 1GAY , 1GAZ , 1GB0 , 1GB2 , 1GB3 , 1GB5 , 1GB6 , 1GB7 , 1GB8 , 1GB9 , 1GBO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00062 Lys 19 146 C-type lysozyme/alpha-lactalbumin family Domain
Sequence
Sequence length 148
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Salivary secretion   Neutrophil degranulation
Antimicrobial peptides
Amyloid fiber formation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amyloidosis Amyloidosis, familial visceral rs63750567, rs63750560, rs387906821, rs387906822, rs387906823, rs1561123748, rs140352180, rs770211260, rs763065333, rs1554300664, rs747723062, rs773435101 8464497, 16523055, 1808634, 21988333
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039
Hypertension Hypertensive disease rs13306026
Kidney disease Kidney Diseases rs74315342, rs749740335, rs757649673, rs112417755, rs35138315
Unknown
Disease term Disease name Evidence References Source
ALys amyloidosis ALys amyloidosis GenCC
Inflammatory Bowel Disease Inflammatory Bowel Disease GWAS
Associations from Text Mining
Disease Name Relationship Type References
AA amyloidosis Associate 11849445, 16126226, 16441658, 17407782, 20382744, 24747948, 30029603, 33640796, 9010773
Adenoma Inhibit 12480915
Adenoma Associate 20002690, 36216310
Alzheimer Disease Associate 27249223, 27327445
Amniotic Band Syndrome Associate 27452435
Amyloid Neuropathies Familial Associate 12675840, 17407782
Amyloidosis Associate 16126226, 21818368, 28049649, 29455155, 37833900
Amyloidosis Familial Associate 11849445, 12050338, 12675840, 20382744, 25217048, 29455155, 39511224
Amyloidosis familial visceral Associate 12675840, 27926837
Aortic Aneurysm Abdominal Associate 22797469