Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4053
Gene name Gene Name - the full gene name approved by the HGNC.
Latent transforming growth factor beta binding protein 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LTBP2
Synonyms (NCBI Gene) Gene synonyms aliases
C14orf141, GLC3D, LTBP3, MSPKA, MSTP031, WMS3
Disease Acronyms (UniProt) Disease acronyms from UniProt database
GLC3D, MSPKA, WMS3
Chromosome Chromosome number
14
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
14q24.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene belongs to the family of latent transforming growth factor (TGF)-beta binding proteins (LTBP), which are extracellular matrix proteins with multi-domain structure. This protein is the largest member of the LTBP family poss
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121918355 G>A,T Pathogenic Stop gained, coding sequence variant, synonymous variant
rs137854855 G>A,C Pathogenic Stop gained, coding sequence variant, missense variant
rs137854856 C>G,T Pathogenic Missense variant, coding sequence variant
rs137854858 C>A,T Likely-pathogenic Missense variant, coding sequence variant
rs137854859 T>C,G Likely-pathogenic Missense variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018706 hsa-miR-335-5p Microarray 18185580
MIRT714270 hsa-miR-3940-3p HITS-CLIP 19536157
MIRT714269 hsa-miR-6850-3p HITS-CLIP 19536157
MIRT714268 hsa-miR-6075 HITS-CLIP 19536157
MIRT714267 hsa-miR-1225-3p HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005201 Function Extracellular matrix structural constituent RCA 20551380, 27559042, 28327460
GO:0005509 Function Calcium ion binding IEA
GO:0005515 Function Protein binding IPI 17293099, 17581631
GO:0005576 Component Extracellular region HDA 27068509
GO:0005615 Component Extracellular space HDA 20551380
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602091 6715 ENSG00000119681
Protein
UniProt ID Q14767
Protein name Latent-transforming growth factor beta-binding protein 2 (LTBP-2)
Protein function May play an integral structural role in elastic-fiber architectural organization and/or assembly.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00683 TB 562 599 TB domain Family
PF07645 EGF_CA 622 661 Calcium-binding EGF domain Domain
PF00683 TB 682 727 TB domain Family
PF07645 EGF_CA 844 885 Calcium-binding EGF domain Domain
PF07645 EGF_CA 887 928 Calcium-binding EGF domain Domain
PF07645 EGF_CA 930 968 Calcium-binding EGF domain Domain
PF07645 EGF_CA 970 1008 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1010 1049 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1051 1091 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1093 1133 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1135 1174 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1176 1216 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1218 1257 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1259 1301 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1303 1343 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1345 1386 Calcium-binding EGF domain Domain
PF00683 TB 1422 1466 TB domain Family
PF07645 EGF_CA 1485 1526 Calcium-binding EGF domain Domain
PF07645 EGF_CA 1528 1566 Calcium-binding EGF domain Domain
PF00683 TB 1594 1639 TB domain Family
PF00008 EGF 1737 1766 EGF-like domain Domain
PF07645 EGF_CA 1774 1817 Calcium-binding EGF domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the aorta (at protein level). Expressed in lung, weakly expressed in heart, placenta, liver and skeletal muscle. {ECO:0000269|PubMed:17293099, ECO:0000269|PubMed:7798248}.
Sequence
MRPRTKARSPGRALRNPWRGFLPLTLALFVGAGHAQRDPVGRYEPAGGDANRLRRPGGSY
PAAAAAKVYSLFREQDAPVAGLQPVERAQPGWGSPRRPTEAEARRPSRAQQSRRVQPPAQ
TRRSTPLGQQQPAPRTRAAPALPRLGTPQRSGAAPPTPPRGRLTGRNVCGGQCCPGWTTA
NSTNHCIKPVCEPPCQNRGSCSRPQLCVCRSGFRGARCEEVIPDEEFDPQNSRLAPRRWA
ERSPNLRRSSAAGEGTLARAQPPAPQSPPAPQSPPAGTLSGLSQTHPSQQHVGLSRTVRL
HPTATASSQLSSNALPPGPGLEQRDGTQQAVPLEHPSSPWGLNLTEKIKKIKIVFTPTIC
KQTCARGHCANSCERGDTTTLYSQGGHGHDPKSGFRIYFCQIPCLNGGRCIGRDECWCPA
NSTGKFCHLPIPQPDREPPGRGSRPRALLEAPLKQSTFTLPLSNQLASVNPSLVKVHIHH
PPEASVQIHQVAQVRGGVEEALVENSVETRPPPWLPASPGHSLWDSNNIPARSGEPPRPL
PPAAPRPRGLLGRCYLNTVNGQCANPLLELTTQEDCCGSVGAFWGVTLCAPCPPRPASPV
IENGQLECPQGYKRLNLTHCQDINECLTLGLCKDAECVNTRGSYLCTCRPGLMLDPSRSR
C
VSDKAISMLQGLCYRSLGPGTCTLPLAQRITKQICCCSRVGKAWGSECEKCPLPGTEAF
REICPAG
HGYTYASSDIRLSMRKAEEEELARPPREQGQRSSGALPGPAERQPLRVVTDTW
LEAGTIPDKGDSQAGQVTTSVTHAPAWVTGNATTPPMPEQGIAEIQEEQVTPSTDVLVTL
STPGIDRCAAGATNVCGPGTCVNLPDGYRCVCSPGYQLHPSQAYCTDDNECLRDPCKGKG
RCINRVGSYSCFCYPGYTLATSGATQEC
QDINECEQPGVCSGGQCTNTEGSYHCECDQGY
IMVRKGHC
QDINECRHPGTCPDGRCVNSPGSYTCLACEEGYRGQSGSCVDVNECLTPGVC
AHGKCTNLEGSFRCSCEQGYEVTSDEKGC
QDVDECASRASCPTGLCLNTEGSFACSACEN
GYWVNEDGTAC
EDLDECAFPGVCPSGVCTNTAGSFSCKDCDGGYRPSPLGDSCEDVDECE
DPQSSCLGGECKNTVGSYQCLCPQGFQLANGTVC
EDVNECMGEEHCAPHGECLNSHGSFF
CLCAPGFVSAEGGTSC
QDVDECATTDPCVGGHCVNTEGSFNCLCETGFQPSPESGECVDI
DECEDYGDPVCGTWKCENSPGSYRCVLGCQPGFHMAPNGDC
IDIDECANDTMCGSHGFCD
NTDGSFRCLCDQGFEISPSGWDC
VDVNECELMLAVCGAALCENVEGSFLCLCASDLEEYD
AQEGHC
RPRGAGGQSMSEAPTGDHAPAPTRMDCYSGQKGHAPCSSVLGRNTTQAECCCTQ
GASWGDACDLCPSEDSAEFSEICPSG
KGYIPVEGAWTFGQTMYTDADECVIFGPGLCPNG
RCLNTVPGYVCLCNPGFHYDASHKKC
EDHDECQDLACENGECVNTEGSFHCFCSPPLTLD
LSQQRC
MNSTSSTEDLPDHDIHMDICWKKVTNDVCSEPLRGHRTTYTECCCQDGEAWSQQ
CALCPPRSSEVYAQLCNVA
RIEAEREAGVHFRPGYEYGPGPDDLHYSIYGPDGAPFYNYL
GPEDTVPEPAFPNTAGHSADRTPILESPLQPSELQPHYVASHPEPPAGFEGLQAEECGIL
NGCENGRCVRVREGYTCDCFEGFQLD
AAHMACVDVNECDDLNGPAVLCVHGYCENTEGSY
RCHCSPGYVAEAGPPHC
TAKE
Sequence length 1821
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Molecules associated with elastic fibres
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Alzheimer disease Alzheimer`s Disease rs63750215, rs28936379, rs63749851, rs63749884, rs28936380, rs63750048, rs63750579, rs63750264, rs63749964, rs63750671, rs281865161, rs63750066, rs63750399, rs63750734, rs63751039
View all (65 more)
21460841
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Congenital glaucoma Primary congenital glaucoma, Congenital glaucoma rs28936700, rs28936701, rs55989760, rs72549389, rs72549387, rs104893629, rs587778873, rs587778875, rs766425037, rs72549380, rs148542782, rs893198212, rs749073455, rs377049098, rs771076928
View all (3 more)
20179738, 19656777
Unknown
Disease term Disease name Evidence References Source
Exfoliation syndrome Exfoliation Syndrome ClinVar
Myocardial infarction Myocardial Infarction 21211798 ClinVar
Weill-Marchesani Syndrome Weill-Marchesani syndrome GenCC
Glaucoma Secondary To Spherophakia/Ectopia Lentis And Megalocornea glaucoma secondary to spherophakia/ectopia lentis and megalocornea GenCC
Associations from Text Mining
Disease Name Relationship Type References
Anterior segment mesenchymal dysgenesis Associate 39870121
Arthritis Rheumatoid Associate 17594488
Astigmatism Associate 38222456
Breast Neoplasms Associate 21527583
Capillary Malformation Arteriovenous Malformation Associate 33098376
Carcinogenesis Associate 30956730
Carcinoma Hepatocellular Stimulate 31574831
Carcinoma Pancreatic Ductal Stimulate 28669978
Cardiovascular Abnormalities Associate 38222456
Cataract zonular Associate 21081970