Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4038
Gene name Gene Name - the full gene name approved by the HGNC.
LDL receptor related protein 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LRP4
Synonyms (NCBI Gene) Gene synonyms aliases
CLSS, CMS17, LRP-4, LRP10, MEGF7, SOST2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CLSS, CMS17, SOST2
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11p11.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the low-density lipoprotein receptor-related protein family. The encoded protein may be a regulator of Wnt signaling. Mutations in this gene are associated with Cenani-Lenz syndrome. [provided by RefSeq, May 2010]
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs61742871 T>C Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs138589242 T>C Conflicting-interpretations-of-pathogenicity Coding sequence variant, genic upstream transcript variant, synonymous variant
rs144974139 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, genic upstream transcript variant, synonymous variant, upstream transcript variant
rs147353838 G>A,C Conflicting-interpretations-of-pathogenicity Synonymous variant, upstream transcript variant, genic upstream transcript variant, coding sequence variant
rs148557097 C>A,T Conflicting-interpretations-of-pathogenicity Intron variant, genic upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004194 hsa-miR-197-3p Microarray 16822819
MIRT019394 hsa-miR-148b-3p Microarray 17612493
MIRT029485 hsa-miR-26b-5p Microarray 19088304
MIRT004194 hsa-miR-197-3p CLASH 23622248
MIRT1118060 hsa-miR-106a CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001822 Process Kidney development IDA 20381006
GO:0001942 Process Hair follicle development IEA
GO:0005509 Function Calcium ion binding IEA
GO:0005515 Function Protein binding IPI 21471202, 28514442
GO:0005886 Component Plasma membrane ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604270 6696 ENSG00000134569
Protein
UniProt ID O75096
Protein name Low-density lipoprotein receptor-related protein 4 (LRP-4) (Multiple epidermal growth factor-like domains 7)
Protein function Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse betwee
PDB 8S9P
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00057 Ldl_recept_a 25 66 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 69 105 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 108 143 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 146 182 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 189 225 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 229 265 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 268 304 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 310 349 Low-density lipoprotein receptor domain class A Repeat
PF12662 cEGF 376 398 Complement Clr-like EGF-like Domain
PF00058 Ldl_recept_b 480 520 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 523 563 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 566 607 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 610 650 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 785 825 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 828 866 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 871 912 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 915 954 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 956 996 Low-density lipoprotein receptor repeat class B Repeat
PF14670 FXa_inhibition 1006 1043 Domain
PF00058 Ldl_recept_b 1093 1133 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 1136 1176 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 1179 1220 Low-density lipoprotein receptor repeat class B Repeat
PF14670 FXa_inhibition 1313 1348 Domain
PF00058 Ldl_recept_b 1397 1437 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 1440 1480 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 1483 1524 Low-density lipoprotein receptor repeat class B Repeat
PF00058 Ldl_recept_b 1527 1563 Low-density lipoprotein receptor repeat class B Repeat
Tissue specificity TISSUE SPECIFICITY: Expressed in bone; present in osteoblasts and osteocytes. No expression is observed in osteoclast. Expressed in several regions of the brain. {ECO:0000269|PubMed:21471202}.
Sequence
MRRQWGALLLGALLCAHGLASSPECACGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDH
SDEDGC
ILPTCSPLDFHCDNGKCIRRSWVCDGDNDCEDDSDEQDCPPRECEEDEFPCQNG
YCIRSLWHCDGDNDCGDNSDEQC
DMRKCSDKEFRCSDGSCIAEHWYCDGDTDCKDGSDEE
NC
PSAVPAPPCNLEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSGEFMCDS
GLCINAGWRCDGDADCDDQSDERNC
TTSMCTAEQFRCHSGRCVRLSWRCDGEDDCADNSD
EENC
ENTGSPQCALDQFLCWNGRCIGQRKLCNGVNDCGDNSDESPQQNCRPRTGEENCNV
NNGGCAQKCQMVRGAVQCTCHTGYRLTEDGHTCQDVNECAEEGYCSQGCTNSEGAFQCWC
ETGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE
LVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW
VHDKLYWTDSGTSRIEVANL
DGAHRKVLLWQNLEKPRAIALHP
MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP
NGLTIDY
AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHT
KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNY
TCACPTGFRKISSHACAQSLDKFLLFARRMDIRRISFDTEDLSDDVIPLADVRSAVALDW
DSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRI
EVANTDGSMRTVLIWENLDRPRDIVV
EPMGGYMYWTDWGASPKIERAGMDASGRQVIISS
NLTWPNGLAIDY
GSQRLYWADAGMKTIEFAGLDGSKRKVLIGSQLPHPFGLTLYGERIYW
TDWQTKSIQSADRLTGLDRETLQENLENLMDIHVFH
RRRPPVSTPCAMENGGCSHLCLRS
PNPSGFSCTCPTGINLLSDGKTC
SPGMNSFLIFARRIDIRMVSLDIPYFADVVVPINITM
KNTIAIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYW
TDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYH
EMGFMYWTDWGENAKLERSGMDGS
DRAVLINNNLGWPNGLTVDK
ASSQLLWADAHTERIEAADLNGANRHTLVSPVQHPYGLTL
LDSYIYWTDWQTRSIHRADKGTGSNVILVRSNLPGLMDMQAVDRAQPLGFNKCGSRNGGC
SHLCLPRPSGFSCACPTGIQLKGDGKTC
DPSPETYLLFSSRGSIRRISLDTSDHTDVHVP
VPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTTDGLAVDWVAR
NLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFP
RKGYLFWTDWGHIAKIERAN
LDGSERKVLINTDLGWPNGLTLDY
DTRRIYWVDAHLDRIESADLNGKLRQVLVSHVSHPF
ALT
QQDRWIYWTDWQTKSIQRVDKYSGRNKETVLANVEGLMDIIVVSPQRQTGTNACGVN
NGGCTHLCFARASDFVCACPDEPDSRPCSLVPGLVPPAPRATGMSEKSPVLPNTPPTTLY
SSTTRTRTSLEEVEGRCSERDARLGLCARSNDAVPAAPGEGLHISYAIGGLLSILLILVV
IAALMLYRHKKSKFTDPGMGNLTYSNPSYRTSTQEVKIEAIPKPAMYNQLCYKKEGGPDH
NYTKEKIKIVEGICLLSGDDAEWDDLKQLRSSRGGLLRDHVCMKTDTVSIQASSGSLDDT
ETEQLLQEEQSECSSVHTAATPERRGSLPDTGWKHERKLSSESQV
Sequence length 1905
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Myasthenic syndrome Congenital Myasthenic Syndromes, Postsynaptic, Congenital Myasthenic Syndromes, Presynaptic, Postsynaptic congenital myasthenic syndromes, Myasthenic Syndromes, Congenital, Myasthenic Syndromes, Congenital, Slow Channel, MYASTHENIC SYNDROME, CONGENITAL, 17 rs606231128, rs606231129, rs606231130, rs606231131, rs606231132, rs118203994, rs118203995, rs863223277, rs606231133, rs121908547, rs121908553, rs121908557, rs104893733, rs104893734, rs121908922
View all (237 more)
24234652, 26052878
Developmental delay Gross motor development delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Hearing loss Sensorineural Hearing Loss (disorder) rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359
View all (184 more)
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Renal hypoplasia Congenital hypoplasia of kidney ClinVar
Myasthenic Syndrome congenital myasthenic syndrome 17, postsynaptic congenital myasthenic syndrome GenCC
Neuroticism Neuroticism GWAS
Associations from Text Mining
Disease Name Relationship Type References
Arnold Chiari Malformation Associate 28513615
Bone Diseases Associate 37640745
Bone Diseases Metabolic Associate 24584697
Carcinoma Hepatocellular Associate 35293286
Cartilage Diseases Associate 39940775
Coffin Lowry Syndrome Associate 37640745
Congenital myasthenic syndrome ib Associate 30994901
Dyskeratosis Congenita Associate 29696773
Fluorosis Dental Associate 27005479
Glycosuria Renal Associate 37640745