Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4000
Gene name Gene Name - the full gene name approved by the HGNC.
Lamin A/C
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LMNA
Synonyms (NCBI Gene) Gene synonyms aliases
CDCD1, CDDC, CMD1A, CMT2B1, EMD2, FPL, FPLD, FPLD2, HGPS, IDC, LDP1, LFP, LGMD1B, LMN1, LMNC, LMNL1, MADA, PRO1
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q22
Summary Summary of gene provided in NCBI Entrez Gene.
The nuclear lamina consists of a two-dimensional matrix of proteins located next to the inner nuclear membrane. The lamin family of proteins make up the matrix and are highly conserved in evolution. During mitosis, the lamina matrix is reversibly disassem
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs11575937 G>A,T Uncertain-significance, pathogenic, not-provided Non coding transcript variant, missense variant, coding sequence variant
rs17847242 G>A Benign, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant, non coding transcript variant
rs28928900 C>G,T Pathogenic, uncertain-significance, not-provided Genic upstream transcript variant, missense variant, non coding transcript variant, coding sequence variant
rs28928901 C>T Pathogenic, not-provided Coding sequence variant, 5 prime UTR variant, missense variant, non coding transcript variant
rs28928902 C>G,T Pathogenic, uncertain-significance, not-provided Coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019532 hsa-miR-340-5p Sequencing 20371350
MIRT021388 hsa-miR-9-5p Microarray 17612493
MIRT022394 hsa-miR-124-3p Proteomics;Microarray 18668037
MIRT052409 hsa-let-7a-5p CLASH 23622248
MIRT051592 hsa-let-7e-5p CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005198 Function Structural molecule activity TAS 3453101, 8344919
GO:0005200 Function Structural constituent of cytoskeleton IBA
GO:0005515 Function Protein binding IPI 10381623, 10514485, 10727209, 11313760, 11587540, 11801724, 14597414, 15140953, 15161933, 15671068, 16247757, 19323649, 19933576, 20000738, 20467437, 20580717, 20618440, 21346760, 21418524, 21949239, 21988832, 21993218, 22399800, 22555292, 23539603, 23658700, 23977161, 24375709, 249
GO:0005634 Component Nucleus HDA 16791210
GO:0005634 Component Nucleus IDA 18809582, 20810912, 24327345
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
150330 6636 ENSG00000160789
Protein
UniProt ID P02545
Protein name Prelamin-A/C [Cleaved into: Lamin-A/C (70 kDa lamin) (Renal carcinoma antigen NY-REN-32)]
Protein function [Lamin-A/C]: Lamins are intermediate filament proteins that assemble into a filamentous meshwork, and which constitute the major components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane (PubMed:10
PDB 1IFR , 1IVT , 1X8Y , 2XV5 , 2YPT , 3GEF , 3V4Q , 3V4W , 3V5B , 6GHD , 6JLB , 6RPR , 6SNZ , 6YF5 , 6YJD , 7CRG , 7D9N , 7WZZ , 7X1B , 7X5D , 7YVD , 7Z21 , 8I33 , 9J8M , 9J8N , 9J8O
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00038 Filament 30 386 Intermediate filament protein Coiled-coil
PF00932 LTD 433 545 Lamin Tail Domain Domain
Tissue specificity TISSUE SPECIFICITY: In the arteries, prelamin-A/C accumulation is not observed in young healthy vessels but is prevalent in medial vascular smooth muscle cells (VSMCs) from aged individuals and in atherosclerotic lesions, where it often colocalizes with s
Sequence
Sequence length 664
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Apoptosis
Cytoskeleton in muscle cells
Hypertrophic cardiomyopathy
Arrhythmogenic right ventricular cardiomyopathy
Dilated cardiomyopathy
  Nuclear Envelope Breakdown
Initiation of Nuclear Envelope (NE) Reformation
Breakdown of the nuclear lamina
XBP1(S) activates chaperone genes
Depolymerisation of the Nuclear Lamina
Signaling by BRAF and RAF fusions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
arrhythmogenic right ventricular cardiomyopathy Arrhythmogenic right ventricular cardiomyopathy rs386134243 N/A
cardiomyopathy Cardiomyopathy rs869125101, rs56816490, rs267607577, rs59332535, rs267607571, rs60682848, rs1057515421, rs267607573, rs1553265647, rs28933093, rs267607554 N/A
Cardiomyopathy Primary familial dilated cardiomyopathy, Primary dilated cardiomyopathy rs56816490, rs267607618, rs267607646, rs58978449, rs878855234, rs111569862, rs794728606, rs1553261855, rs60682848, rs61046466, rs794728593, rs57520892, rs58917027, rs397517909, rs267607582
View all (40 more)
N/A
Charcot-Marie-Tooth Disease Charcot-Marie-Tooth disease type 2, Charcot-Marie-Tooth Disease rs1553265455, rs267607599, rs1553265865, rs61295588, rs56793579, rs267607542, rs397517908, rs386134243, rs57730570, rs267607592, rs878855234, rs267607634, rs1572332235, rs1572359505, rs397517889
View all (152 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Atrial Fibrillation atrial fibrillation N/A N/A GenCC
Catecholaminergic Polymorphic Ventricular Tachycardia Catecholaminergic polymorphic ventricular tachycardia 1 N/A N/A ClinVar
Diabetes Mellitus With Acanthosis Nigricans Insulin-resistant diabetes mellitus AND acanthosis nigricans N/A N/A ClinVar
Dilated Cardiomyopathy-Hypergonadotropic Hypogonadism Syndrome dilated cardiomyopathy-hypergonadotropic hypogonadism syndrome N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 34360639
Acanthosis Nigricans Associate 29267953, 31857427
Acro Osteolysis Associate 26733286
Acute Disease Associate 35384599
Adenocarcinoma of Lung Associate 32111074
Adenoma Associate 36561231
Adrenocortical Carcinoma Associate 25691058
Aging Premature Associate 16262891, 16738054, 18847334, 19926845, 23257959, 23439683, 23873483, 24623722, 24786082, 25399868, 25649378, 28423660, 28857661, 29405587, 29791652
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Alcohol Related Disorders Associate 20130076, 26098624
Alopecia Associate 18256394