Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3984
Gene name Gene Name - the full gene name approved by the HGNC.
LIM domain kinase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LIMK1
Synonyms (NCBI Gene) Gene synonyms aliases
LIMK, LIMK-1
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q11.23
Summary Summary of gene provided in NCBI Entrez Gene.
There are approximately 40 known eukaryotic LIM proteins, so named for the LIM domains they contain. LIM domains are highly conserved cysteine-rich structures containing 2 zinc fingers. Although zinc fingers usually function by binding to DNA or RNA, the
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT020461 hsa-miR-106b-5p Microarray 17242205
MIRT042722 hsa-miR-346 CLASH 23622248
MIRT052914 hsa-miR-20a-5p Luciferase reporter assay, Microarray, qRT-PCR, Western blot 24858712
MIRT054222 hsa-miR-17-5p Immunoblot, Luciferase reporter assay, qRT-PCR 23029228
MIRT054223 hsa-miR-20b-5p Immunoblot, Luciferase reporter assay, qRT-PCR 23029228
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001673 Component Male germ cell nucleus IEA
GO:0004672 Function Protein kinase activity IEA
GO:0004672 Function Protein kinase activity NAS 8537403
GO:0004674 Function Protein serine/threonine kinase activity IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601329 6613 ENSG00000106683
Protein
UniProt ID P53667
Protein name LIM domain kinase 1 (LIMK-1) (EC 2.7.11.1)
Protein function Serine/threonine-protein kinase that plays an essential role in the regulation of actin filament dynamics. Acts downstream of several Rho family GTPase signal transduction pathways (PubMed:10436159, PubMed:11832213, PubMed:12807904, PubMed:15660
PDB 3S95 , 5HVJ , 5HVK , 5L6W , 5NXC , 6WLY , 7ATS , 7ATU , 7B8W , 8AAU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00412 LIM 25 80 LIM domain Domain
PF00412 LIM 84 142 LIM domain Domain
PF00595 PDZ 165 255 PDZ domain Domain
PF07714 PK_Tyr_Ser-Thr 339 604 Protein tyrosine and serine/threonine kinase Domain
Tissue specificity TISSUE SPECIFICITY: Highest expression in both adult and fetal nervous system. Detected ubiquitously throughout the different regions of adult brain, with highest levels in the cerebral cortex. Expressed to a lesser extent in heart and skeletal muscle.
Sequence
Sequence length 647
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Axon guidance
Fc gamma R-mediated phagocytosis
Regulation of actin cytoskeleton
Yersinia infection
Human immunodeficiency virus 1 infection
  Regulation of actin dynamics for phagocytic cup formation
Sema3A PAK dependent Axon repulsion
RHO GTPases activate PAKs
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Systemic lupus erythematosus Systemic lupus erythematosus N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Arrhythmias Cardiac Associate 31560829
Breast Neoplasms Associate 17559677, 18000399, 19153192, 21219645, 27116935, 31078043, 34079084, 34486491
Carcinoma Ductal Breast Associate 19153192
Carcinoma Hepatocellular Associate 26271467
Carcinoma Non Small Cell Lung Associate 23154546, 25003638, 25975262
Carcinoma Squamous Cell Associate 25019203
Chromosomal Instability Associate 17559677, 24642638
Chromosome Aberrations Stimulate 17559677
Cognition Disorders Associate 8689688, 8812460
Colonic Neoplasms Associate 38238555