Gene Gene information from NCBI Gene database.
Entrez ID 392255
Gene name Growth differentiation factor 6
Gene symbol GDF6
Synonyms (NCBI Gene)
BMP-13BMP13CDMP2KFMKFSKFS1KFSLSGM1SYNS4
Chromosome 8
Chromosome location 8q22.1
Summary This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate
SNPs SNP information provided by dbSNP.
12
SNP ID Visualize variation Clinical significance Consequence
rs63751220 A>G Uncertain-significance, pathogenic Coding sequence variant, missense variant
rs121909352 G>T Likely-benign, uncertain-significance, pathogenic Missense variant, coding sequence variant
rs121909353 T>C Likely-benign, pathogenic Missense variant, coding sequence variant
rs121909354 C>A,G Pathogenic Missense variant, coding sequence variant
rs121909355 T>A,C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
54
miRTarBase ID miRNA Experiments Reference
MIRT724186 hsa-miR-6887-3p HITS-CLIP 19536157
MIRT724185 hsa-miR-6795-3p HITS-CLIP 19536157
MIRT724184 hsa-miR-3127-3p HITS-CLIP 19536157
MIRT724183 hsa-miR-6756-3p HITS-CLIP 19536157
MIRT724182 hsa-miR-5088-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0001656 Process Metanephros development IDA 32737436
GO:0001656 Process Metanephros development IEA
GO:0005125 Function Cytokine activity IBA
GO:0005125 Function Cytokine activity IEA
GO:0005515 Function Protein binding IPI 18586671
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601147 4221 ENSG00000156466
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q6KF10
Protein name Growth/differentiation factor 6 (GDF-6) (Bone morphogenetic protein 13) (BMP-13) (Growth/differentiation factor 16)
Protein function Growth factor that controls proliferation and cellular differentiation in the retina and bone formation. Plays a key role in regulating apoptosis during retinal development. Establishes dorsal-ventral positional information in the retina and con
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00688 TGFb_propeptide 64 281 TGF-beta propeptide Family
PF00019 TGF_beta 353 454 Transforming growth factor beta like domain Domain
Sequence
Sequence length 455
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cytokine-cytokine receptor interaction
TGF-beta signaling pathway
Hippo signaling pathway
 
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1404
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Klippel-Feil syndrome 1, autosomal dominant Likely pathogenic rs2130205786 RCV002226947
Leber congenital amaurosis 17 Pathogenic rs1401531865 RCV000054425
Multiple synostoses syndrome 4 Pathogenic rs1554571213 RCV000585781
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal dominant Parkinson disease 8 Conflicting classifications of pathogenicity rs121909353 RCV000984889
Congenital anomaly of kidney and urinary tract Conflicting classifications of pathogenicity rs121909352, rs139075817 RCV001255226
RCV001255225
GDF6-related disorder Likely benign; Conflicting classifications of pathogenicity; Uncertain significance rs138730867, rs774587683, rs121909352, rs63751220, rs1224870639, rs139075817, rs397514725, rs143020575, rs762304422 RCV003938689
RCV003938740
RCV003934812
RCV003952350
RCV003909853
RCV003955779
RCV004757958
RCV003962938
RCV003953595
Isolated microphthalmia 4 Uncertain significance; Likely benign; Conflicting classifications of pathogenicity; Benign rs1812440547, rs1277401260, rs768532556, rs772188117, rs1812739209, rs752600101, rs1451309614, rs552234954, rs1269055850, rs1178158158, rs762654952, rs1262253139, rs958381615, rs1378920942, rs1812745847
View all (280 more)
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RCV000008881
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Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Alzheimer Disease Associate 24618041
Anophthalmos Associate 21203406
Carcinoma Hepatocellular Associate 37446238
Colorectal Neoplasms Associate 32407802
Eye Abnormalities Associate 25457163
Fibrocartilaginous embolism Stimulate 24618041
Fibrocartilaginous embolism Associate 31066515
Granuloma Annulare Inhibit 26134557
Klippel Feil Syndrome Associate 19240811, 23620759, 26238661, 32278351
Macular Degeneration Associate 25416513