Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
388662
Gene name Gene Name - the full gene name approved by the HGNC.
Solute carrier family 6 member 17
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SLC6A17
Synonyms (NCBI Gene) Gene synonyms aliases
MRT48, NTT4
Disease Acronyms (UniProt) Disease acronyms from UniProt database
MRT48
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p13.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the SLC6 family of transporters, which are responsible for the presynaptic uptake of most neurotransmitters. The encoded vesicular transporter is selective for proline, glycine, leucine and alanine. In mouse
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs375380880 C>G,T Pathogenic Coding sequence variant, missense variant
rs775085213 G>A Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT572975 hsa-miR-1273d HITS-CLIP 23824327
MIRT572973 hsa-miR-6793-3p HITS-CLIP 23824327
MIRT572972 hsa-miR-4286 HITS-CLIP 23824327
MIRT653462 hsa-miR-4433a-5p HITS-CLIP 23824327
MIRT653461 hsa-miR-128-3p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183
GO:0005887 Component Integral component of plasma membrane IEA
GO:0006836 Process Neurotransmitter transport IEA
GO:0007420 Process Brain development ISS
GO:0008021 Component Synaptic vesicle IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
610299 31399 ENSG00000197106
Protein
UniProt ID Q9H1V8
Protein name Sodium-dependent neutral amino acid transporter SLC6A17 (Sodium-dependent neurotransmitter transporter NTT4) (Solute carrier family 6 member 17)
Protein function Synaptic vesicle transporter with apparent selectivity for neutral amino acids. The transport is sodium-coupled but chloride-independent, likely driven by the proton electrochemical gradient generated by vacuolar H(+)-ATPase in an overall electr
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00209 SNF 60 643 Sodium:neurotransmitter symporter family Family
Sequence
Sequence length 727
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Basal cell neoplasm Basal Cell Neoplasm, Basal Cell Cancer rs587776578, rs587776579, rs2117956624, rs2118419579, rs2118365442, rs2118041703, rs2136689212, rs2118336503, rs1587692888, rs267606984, rs878853849, rs1554695110, rs1064793921, rs1588605348, rs1588568813 31174203
Carcinoma Basal cell carcinoma rs121912654, rs555607708, rs786202962, rs1564055259 31174203
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Mental retardation Severe intellectual disability, MENTAL RETARDATION, AUTOSOMAL RECESSIVE 48 rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
25704603
Associations from Text Mining
Disease Name Relationship Type References
Breast Neoplasms Associate 36553681