MALAT1 (metastasis associated lung adenocarcinoma transcript 1)

Gene
Gene miRNA Gene ontology Other IDs Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
378938
Gene name Gene Name - the full gene name approved by the HGNC.
Metastasis associated lung adenocarcinoma transcript 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
MALAT1
Synonyms (NCBI Gene) Gene synonyms aliases
HCN, LINC00047, NCRNA00047, NEAT2, PRO2853
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11q13.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene produces a precursor transcript from which a long non-coding RNA is derived by RNase P cleavage of a tRNA-like small ncRNA (known as mascRNA) from its 3` end. The resultant mature transcript lacks a canonical poly(A) tail but is instead stabiliz
miRNA miRNA information provided by mirtarbase database.
Gene miRNA Gene ontology Other IDs Associated diseases
Show/Hide all(36)
miRTarBase ID miRNA Experiments Reference
MIRT054196 hsa-miR-9-5p Immunoprecipitaion, In situ hybridization, Luciferase reporter assay, Next Generation Sequencing (NGS), qRT-PCR, Western blot 23985560
MIRT731897 hsa-miR-200c-3p Luciferase reporter assay, qRT-PCR 27693631
MIRT731897 hsa-miR-200c-3p Luciferase reporter assay, qRT-PCR 27693631
MIRT731897 hsa-miR-200c-3p Luciferase reporter assay, qRT-PCR 27693631
MIRT731897 hsa-miR-200c-3p Luciferase reporter assay, qRT-PCR 27693631
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
Gene miRNA Gene ontology Other IDs Associated diseases
Show/Hide all(1)
GO ID Ontology Definition Evidence Reference
GO:2000147 Process Positive regulation of cell motility IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
Gene miRNA Gene ontology Other IDs Associated diseases
MIM HGNC e!Ensembl
607924 29665 ENSG00000251562
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Gene miRNA Gene ontology Other IDs Associated diseases
Show/Hide Unknown Diseases (2)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Glaucoma Glaucoma N/A N/A GWAS
Metabolic Syndrome Metabolic syndrome N/A N/A GWAS
Show/Hide Text Mining Associations (279)
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abortion Habitual Inhibit 30173780, 30848022
Abortion Spontaneous Associate 30173780
Abortion Spontaneous Inhibit 30848022
Acute Kidney Injury Stimulate 34240756
Acute Lung Injury Associate 31871512
Adenocarcinoma Associate 33318305, 38203269
Adenocarcinoma of Lung Associate 20937273, 28253859
Adenoma Associate 35887000
Adenomatous Polyps Associate 34200314
Alcoholism Associate 33436407