Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
375298
Gene name Gene Name - the full gene name approved by the HGNC.
CERK like autophagy regulator
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CERKL
Synonyms (NCBI Gene) Gene synonyms aliases
RP26
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q31.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene was initially identified as a locus (RP26) associated with an autosomal recessive form of retinitis pigmentosa (arRP) disease. This gene encodes a protein with ceramide kinase-like domains, however, the protein does not phosphorylate ceramide an
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs78484040 C>T Likely-pathogenic Coding sequence variant, intron variant, non coding transcript variant, missense variant
rs121909398 G>A,C Pathogenic Non coding transcript variant, coding sequence variant, missense variant, intron variant, stop gained
rs140898616 C>G,T Conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Non coding transcript variant, synonymous variant, coding sequence variant, intron variant
rs141389059 C>T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, missense variant
rs151110889 C>A Conflicting-interpretations-of-pathogenicity Intron variant, missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT643876 hsa-miR-4762-5p HITS-CLIP 23824327
MIRT662112 hsa-miR-4433a-3p HITS-CLIP 23824327
MIRT643877 hsa-miR-676-5p HITS-CLIP 23824327
MIRT643874 hsa-miR-3671 HITS-CLIP 23824327
MIRT643875 hsa-miR-607 HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001727 Function Lipid kinase activity IBA
GO:0001750 Component Photoreceptor outer segment IEA
GO:0001917 Component Photoreceptor inner segment IEA
GO:0005515 Function Protein binding IPI 33961781
GO:0005634 Component Nucleus IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
608381 21699 ENSG00000188452
Protein
UniProt ID Q49MI3
Protein name Ceramide kinase-like protein
Protein function Has no detectable ceramide-kinase activity. Overexpression of CERKL protects cells from apoptosis in oxidative stress conditions.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00781 DAGK_cat 168 335 Diacylglycerol kinase catalytic domain Family
Tissue specificity TISSUE SPECIFICITY: Isoform 1 and isoform 2 are expressed in adult retina, liver and pancreas as well as in fetal brain, lung and kidney. Isoform 3 is expressed in adult retina as well as in fetal lung and liver. Isoform 4 is expressed in adult retina, lu
Sequence
MPWRRRRNRVSALEGGREEEAPPEAAAVPPALLTSPQQTEAAAERILLRGIFEIGRDSCD
VVLSERALRWRPIQPERPAGDSKYDLLCKEEFIELKDIFSVKLKRRCSVKQQRSGTLLGI
TLFICLKKEQNKLKNSTLDLINLSEDHCDIWFRQFKKILAGFPNRPKSLKILLNPQSHKK
EATQVYYEKVEPLLKLAGIKTDVTIMEYEGHALSLLKECELQGFDGGHRKPLFAIHWSVQ
RLFTGMQTLEPSVVCVGGDGSASEVAHALLLRAQKNAGMETDRILTPVRAQLPLGLIPAG
STNVLAHSLHGVPHVITATLHIIMGHVQLVDVCTF
STAGKLLRFGFSAMFGFGGRTLALA
EKYRWMSPNQRRDFAVVKALAKLKAEDCEISFLPFNSSDDVQERRAQGSPKSDCNDQWQM
IQGQFLNVSIMAIPCLCSVAPRGLAPNTRLNNGSMALIIARNTSRPEFIKHLKRYASVKN
QFNFPFVETYTVEEVKVHPRNNTGGYNPEEEEDETASENCFPWNVDGDLMEVASEVHIRL
HPRLISLYGGSMEEMIPK
Sequence length 558
Interactions View interactions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
cone-rod dystrophy Cone-rod dystrophy rs78484040, rs121909398, rs1689012192, rs746128841 N/A
retinal dystrophy Retinal dystrophy rs1187839124, rs1689010156, rs769632183, rs1553513437, rs776727320, rs1689011389, rs750151209, rs569826109, rs121909398, rs200711686, rs201186440, rs746128841, rs1685573282, rs1687854945, rs188492864
View all (5 more)
N/A
Retinitis Pigmentosa retinitis pigmentosa 26, retinitis pigmentosa, Autosomal recessive retinitis pigmentosa rs1003615909, rs398122964, rs1685567937, rs1688308445, rs1553513437, rs1187839124, rs1238123416, rs1574489337, rs1476585944, rs786205545, rs1559100465, rs121909398, rs1689010156, rs1276597208, rs769632183
View all (19 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Macular dystrophy Isolated macular dystrophy N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Carcinoma Squamous Cell Associate 33393080
Cataract Associate 40141357
Cone Rod Dystrophies Associate 20554613, 24498393, 29555955, 30926958
Eye Diseases Hereditary Associate 33322828
Hypertensive Retinopathy Associate 30696906
Keratosis Actinic Associate 33393080
Macular Degeneration Associate 30696906, 37331655
Muscular Disorders Atrophic Associate 37322672
Refsum Disease Infantile Associate 27898983, 40141357
Retinal Degeneration Associate 18978954, 26352687, 28130426, 30696906