Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3693
Gene name Gene Name - the full gene name approved by the HGNC.
Integrin subunit beta 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ITGB5
Synonyms (NCBI Gene) Gene synonyms aliases
-
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q21.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a beta subunit of integrin, which can combine with different alpha chains to form a variety of integrin heterodimers. Integrins are integral cell-surface receptors that participate in cell adhesion as well as cell-surface mediated signal
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018321 hsa-miR-335-5p Microarray 18185580
MIRT020894 hsa-miR-155-5p Proteomics 18668040
MIRT051994 hsa-let-7b-5p CLASH 23622248
MIRT1074167 hsa-miR-1179 CLIP-seq
MIRT1074168 hsa-miR-1207-5p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001618 Function Virus receptor activity IEA
GO:0002479 Process Antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS
GO:0005178 Function Integrin binding IBA 21873635
GO:0005515 Function Protein binding IPI 1694173, 15611078, 19910644, 21397862, 21642953, 24997346, 25448675, 32296183
GO:0005886 Component Plasma membrane TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
147561 6160 ENSG00000082781
Protein
UniProt ID P18084
Protein name Integrin beta-5
Protein function Integrin alpha-V/beta-5 (ITGAV:ITGB5) is a receptor for fibronectin. It recognizes the sequence R-G-D in its ligand.; (Microbial infection) Integrin ITGAV:ITGB5 acts as a receptor for adenovirus type C.
PDB 7S46 , 7S47 , 7S48
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF17205 PSI_integrin 26 76 Integrin plexin domain Domain
PF00362 Integrin_beta 133 382 Integrin beta chain VWA domain Domain
PF18372 I-EGF_1 465 493 Integrin beta epidermal growth factor like domain 1 Domain
PF07965 Integrin_B_tail 635 719 Integrin beta tail domain Domain
PF08725 Integrin_b_cyt 743 788 Integrin beta cytoplasmic domain Domain
Sequence
MPRAPAPLYACLLGLCALLPRLAGLNICTSGSATSCEECLLIHPKCAWCSKEDFGSPRSI
TSRCDLRANLVKNGCG
GEIESPASSFHVLRSLPLSSKGSGSAGWDVIQMTPQEIAVNLRP
GDKTTFQLQVRQVEDYPVDLYYLMDLSLSMKDDLDNIRSLGTKLAEEMRKLTSNFRLGFG
SFVDKDISPFSYTAPRYQTNPCIGYKLFPNCVPSFGFRHLLPLTDRVDSFNEEVRKQRVS
RNRDAPEGGFDAVLQAAVCKEKIGWRKDALHLLVFTTDDVPHIALDGKLGGLVQPHDGQC
HLNEANEYTASNQMDYPSLALLGEKLAENNINLIFAVTKNHYMLYKNFTALIPGTTVEIL
DGDSKNIIQLIINAYNSIRSKV
ELSVWDQPEDLNLFFTATCQDGVSYPGQRKCEGLKIGD
TASFEVSLEARSCPSRHTEHVFALRPVGFRDSLEVGVTYNCTCGCSVGLEPNSARCNGSG
TYVCGLCECSPGY
LGTRCECQDGENQSVYQNLCREAEGKPLCSGRGDCSCNQCSCFESEF
GKIYGPFCECDNFSCARNKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDISTCRGRDGQ
ICSERGHCLCGQCQCTEPGAFGEMCEKCPTCPDACSTKRDCVECLLLHSGKPDNQTCHSL
CRDEVITWVDTIVKDDQEAVLCFYKTAKDCVMMFTYVELPSGKSNLTVLREPECGNTPN
A
MTILLAVVGSILLVGLALLAIWKLLVTIHDRREFAKFQSERSRARYEMASNPLYRKPIST
HTVDFTFN
KFNKSYNGTVD
Sequence length 799
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Phagosome
Efferocytosis
PI3K-Akt signaling pathway
Focal adhesion
ECM-receptor interaction
Regulation of actin cytoskeleton
Cytoskeleton in muscle cells
Human papillomavirus infection
Proteoglycans in cancer
Hypertrophic cardiomyopathy
Arrhythmogenic right ventricular cardiomyopathy
Dilated cardiomyopathy
  Cross-presentation of particulate exogenous antigens (phagosomes)
Molecules associated with elastic fibres
Integrin cell surface interactions
Syndecan interactions
ECM proteoglycans
Smooth Muscle Contraction
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Arthritis Juvenile arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 19565504
Unknown
Disease term Disease name Evidence References Source
Mental depression Major Depressive Disorder 22915352 ClinVar
Hypertension Hypertension GWAS
Alzheimer disease Alzheimer disease GWAS
Carpal Tunnel Syndrome Carpal Tunnel Syndrome GWAS
Associations from Text Mining
Disease Name Relationship Type References
Androgen Insensitivity Syndrome Associate 25313366
Arrhythmogenic Right Ventricular Dysplasia Associate 27613243
Bipolar Disorder Stimulate 31695175
Carcinoma Hepatocellular Associate 32951492, 36212176, 37149115
Carcinoma Hepatocellular Stimulate 37603520
Carcinoma Pancreatic Ductal Associate 40520021
Cardiomyopathies Associate 27613243
Cartilage Diseases Associate 9741315
Colorectal Neoplasms Associate 24737953
Death Associate 18224668