Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	35
Gene name Gene Name - the full gene name approved by the HGNC.	Acyl-CoA dehydrogenase short chain
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	ACADS
Synonyms (NCBI Gene) Gene synonyms aliases	ACAD3, SCAD
Chromosome Chromosome number	12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	12q24.31
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes a tetrameric mitochondrial flavoprotein, which is a member of the acyl-CoA dehydrogenase family. This enzyme catalyzes the initial step of the mitochondrial fatty acid beta-oxidation pathway. Mutations in this gene have been associated w

Show/Hide all(56)

SNP ID	Visualize variation	Clinical significance	Consequence
rs1800556	C>T	Conflicting-interpretations-of-pathogenicity, pathogenic	Coding sequence variant, intron variant, missense variant
rs28940872	C>T	Pathogenic, likely-pathogenic	Missense variant, coding sequence variant
rs28940875	C>G,T	Pathogenic	Missense variant, coding sequence variant
rs28941773	C>T	Likely-pathogenic, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs57443665	T>C,G	Pathogenic-likely-pathogenic, pathogenic	Missense variant, intron variant, coding sequence variant
rs61732144	C>T	Pathogenic, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs117356004	G>A	Likely-pathogenic	Coding sequence variant, missense variant
rs121908003	C>T	Likely-pathogenic, pathogenic	Coding sequence variant, missense variant
rs121908006	C>T	Pathogenic, uncertain-significance	Coding sequence variant, missense variant
rs140853839	C>A,T	Likely-pathogenic, pathogenic	Missense variant, coding sequence variant
rs147442301	C>T	Pathogenic-likely-pathogenic	Missense variant, coding sequence variant
rs149107232	G>A,C	Likely-pathogenic	Missense variant, stop gained, coding sequence variant
rs183161718	C>T	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs202124189	G>A,T	Uncertain-significance, pathogenic	Missense variant, coding sequence variant
rs368469075	G>T	Pathogenic, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs374726386	G>A	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs387906308	GAG>-	Likely-pathogenic, pathogenic	Coding sequence variant, inframe deletion
rs387906950	A>G	Pathogenic-likely-pathogenic	Missense variant, coding sequence variant
rs537072819	C>T	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs539219309	C>T	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs541587321	C>G,T	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant, stop gained
rs746368198	G>A	Uncertain-significance, pathogenic	Coding sequence variant, missense variant
rs749491616	C>G,T	Likely-pathogenic, pathogenic	Coding sequence variant, stop gained, synonymous variant
rs750941135	->A	Likely-pathogenic	Coding sequence variant, frameshift variant
rs752677472	C>G,T	Likely-pathogenic	Missense variant, coding sequence variant, stop gained
rs753758429	C>G,T	Likely-pathogenic	Missense variant, coding sequence variant, stop gained
rs765758808	->CGGGCCC	Likely-pathogenic	Coding sequence variant, frameshift variant
rs766579880	C>T	Conflicting-interpretations-of-pathogenicity	Coding sequence variant, missense variant, intron variant
rs767155955	A>C,T	Likely-pathogenic	Coding sequence variant, missense variant
rs767774362	C>T	Uncertain-significance, likely-pathogenic	Coding sequence variant, stop gained
rs780571371	G>A,T	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs786204691	GA>-	Likely-pathogenic, pathogenic	Frameshift variant, coding sequence variant
rs796051902	G>T	Likely-pathogenic	Missense variant, coding sequence variant
rs796051905	G>T	Pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs796051906	CGC>TGT	Pathogenic, likely-pathogenic	Missense variant, coding sequence variant
rs932525260	G>A	Uncertain-significance, likely-pathogenic	Coding sequence variant, missense variant
rs1001298373	C>T	Likely-pathogenic	Coding sequence variant, missense variant
rs1057516231	A>G	Likely-pathogenic	Intron variant, splice acceptor variant
rs1057516385	C>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1057516421	TG>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1057516436	->G	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1057516566	G>A	Likely-pathogenic	Splice acceptor variant
rs1057516606	->C	Conflicting-interpretations-of-pathogenicity	Frameshift variant, coding sequence variant
rs1057516639	G>A	Likely-pathogenic	Splice donor variant
rs1057516685	TT>-	Likely-pathogenic	Intron variant, frameshift variant, coding sequence variant
rs1057516733	TCCAGACATGC>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1057516848	C>A	Likely-pathogenic	Intron variant, stop gained, coding sequence variant
rs1057516967	G>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1057517155	A>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1064793612	C>-	Pathogenic	Frameshift variant, coding sequence variant
rs1064795254	CGT>TGC	Pathogenic	Missense variant, coding sequence variant
rs1226857910	G>A	Likely-pathogenic	Splice acceptor variant
rs1291226969	A>G	Likely-pathogenic	Initiator codon variant, missense variant
rs1555244280	GC>AT	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs1555244366	G>-	Likely-pathogenic	Splice donor variant, coding sequence variant
rs1555244367	G>A,T	Likely-pathogenic	Splice donor variant

Show/Hide all(51)

miRTarBase ID	miRNA	Experiments	Reference
MIRT029099	hsa-miR-26b-5p	Microarray	19088304
MIRT049063	hsa-miR-92a-3p	CLASH	23622248
MIRT041697	hsa-miR-484	CLASH	23622248
MIRT735703	hsa-miR-125b-5p	Luciferase reporter assay, Western blotting, qRT-PCR	31912457
MIRT761470	hsa-miR-149	CLIP-seq
MIRT761471	hsa-miR-3170	CLIP-seq
MIRT761472	hsa-miR-331-3p	CLIP-seq
MIRT761473	hsa-miR-342-5p	CLIP-seq
MIRT761474	hsa-miR-3612	CLIP-seq
MIRT761475	hsa-miR-4443	CLIP-seq
MIRT761476	hsa-miR-4651	CLIP-seq
MIRT761477	hsa-miR-4664-5p	CLIP-seq
MIRT761478	hsa-miR-608	CLIP-seq
MIRT761479	hsa-miR-650	CLIP-seq
MIRT1545051	hsa-miR-1225-3p	CLIP-seq
MIRT1545052	hsa-miR-3943	CLIP-seq
MIRT1545053	hsa-miR-4632	CLIP-seq
MIRT1924520	hsa-miR-1343	CLIP-seq
MIRT1924521	hsa-miR-1910	CLIP-seq
MIRT1545051	hsa-miR-1225-3p	CLIP-seq
MIRT2165775	hsa-miR-205	CLIP-seq
MIRT1545052	hsa-miR-3943	CLIP-seq
MIRT2165776	hsa-miR-4446-3p	CLIP-seq
MIRT2165777	hsa-miR-4494	CLIP-seq
MIRT1545053	hsa-miR-4632	CLIP-seq
MIRT2165778	hsa-miR-499a-5p	CLIP-seq
MIRT2165779	hsa-miR-520d-5p	CLIP-seq
MIRT2165780	hsa-miR-524-5p	CLIP-seq
MIRT1545051	hsa-miR-1225-3p	CLIP-seq
MIRT1545052	hsa-miR-3943	CLIP-seq
MIRT1545053	hsa-miR-4632	CLIP-seq
MIRT1545051	hsa-miR-1225-3p	CLIP-seq
MIRT2468382	hsa-miR-1915	CLIP-seq
MIRT2468383	hsa-miR-2355-5p	CLIP-seq
MIRT1545052	hsa-miR-3943	CLIP-seq
MIRT2468384	hsa-miR-4270	CLIP-seq
MIRT2468385	hsa-miR-4441	CLIP-seq
MIRT2468386	hsa-miR-4667-5p	CLIP-seq
MIRT2468387	hsa-miR-4700-5p	CLIP-seq
MIRT2468388	hsa-miR-615-5p	CLIP-seq
MIRT2468389	hsa-miR-637	CLIP-seq
MIRT1545051	hsa-miR-1225-3p	CLIP-seq
MIRT2468382	hsa-miR-1915	CLIP-seq
MIRT2468383	hsa-miR-2355-5p	CLIP-seq
MIRT1545052	hsa-miR-3943	CLIP-seq
MIRT2468384	hsa-miR-4270	CLIP-seq
MIRT2468385	hsa-miR-4441	CLIP-seq
MIRT2468386	hsa-miR-4667-5p	CLIP-seq
MIRT2468387	hsa-miR-4700-5p	CLIP-seq
MIRT2468388	hsa-miR-615-5p	CLIP-seq
MIRT2468389	hsa-miR-637	CLIP-seq

Show/Hide all(28)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003995	Function	Acyl-CoA dehydrogenase activity	IDA	3597357
GO:0003995	Function	Acyl-CoA dehydrogenase activity	IEA
GO:0003995	Function	Acyl-CoA dehydrogenase activity	IMP	11134486
GO:0003995	Function	Acyl-CoA dehydrogenase activity	ISS
GO:0003995	Function	Acyl-CoA dehydrogenase activity	TAS	2565344
GO:0005515	Function	Protein binding	IPI	28514442, 33961781
GO:0005634	Component	Nucleus	HDA	21630459
GO:0005739	Component	Mitochondrion	HTP	34800366
GO:0005739	Component	Mitochondrion	IBA
GO:0005739	Component	Mitochondrion	IDA	16729965
GO:0005739	Component	Mitochondrion	IEA
GO:0005759	Component	Mitochondrial matrix	IEA
GO:0005759	Component	Mitochondrial matrix	ISS
GO:0005759	Component	Mitochondrial matrix	TAS
GO:0006629	Process	Lipid metabolic process	IEA
GO:0006631	Process	Fatty acid metabolic process	IEA
GO:0006635	Process	Fatty acid beta-oxidation	IC	11134486
GO:0006635	Process	Fatty acid beta-oxidation	TAS	8276399
GO:0016491	Function	Oxidoreductase activity	IEA
GO:0016627	Function	Oxidoreductase activity, acting on the CH-CH group of donors	IEA
GO:0016937	Function	Short-chain fatty acyl-CoA dehydrogenase activity	IBA
GO:0016937	Function	Short-chain fatty acyl-CoA dehydrogenase activity	IEA
GO:0016937	Function	Short-chain fatty acyl-CoA dehydrogenase activity	ISS
GO:0033539	Process	Fatty acid beta-oxidation using acyl-CoA dehydrogenase	IBA
GO:0033539	Process	Fatty acid beta-oxidation using acyl-CoA dehydrogenase	IDA	3597357
GO:0033539	Process	Fatty acid beta-oxidation using acyl-CoA dehydrogenase	IEA
GO:0046359	Process	Butyrate catabolic process	IBA
GO:0050660	Function	Flavin adenine dinucleotide binding	IEA

MIM	HGNC	e!Ensembl
606885	90	ENSG00000122971

Protein

UniProt ID

P16219

Protein name

Short-chain specific acyl-CoA dehydrogenase, mitochondrial (SCAD) (EC 1.3.8.1) (Butyryl-CoA dehydrogenase)

Protein function

Short-chain specific acyl-CoA dehydrogenase is one of the acyl-CoA dehydrogenases that catalyze the first step of mitochondrial fatty acid beta-oxidation, an aerobic process breaking down fatty acids into acetyl-CoA and allowing the production o

PDB

2VIG , 7Y0A , 7Y0B , 8SGS

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF02771	Acyl-CoA_dh_N	35 → 147	Acyl-CoA dehydrogenase, N-terminal domain	Domain
PF02770	Acyl-CoA_dh_M	151 → 246	Acyl-CoA dehydrogenase, middle domain	Domain
PF00441	Acyl-CoA_dh_1	258 → 407	Acyl-CoA dehydrogenase, C-terminal domain	Domain

Sequence

MAAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQTCRDFAEKELFPIAAQV
DKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNN
SLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLN
GTKAWITNAWEASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTAN
LIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAF
GAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAIS
HQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRS

Sequence length

412

Interactions

View interactions

	KEGG		Reactome
	Fatty acid degradation Valine, leucine and isoleucine degradation beta-Alanine metabolism Propanoate metabolism Butanoate metabolism Metabolic pathways Carbon metabolism Fatty acid metabolism		Beta oxidation of hexanoyl-CoA to butanoyl-CoA Beta oxidation of butanoyl-CoA to acetyl-CoA

Show/Hide Causal Diseases (1)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Deficiency Of Butyryl-CoA Dehydrogenase	deficiency of butyryl-coa dehydrogenase	rs796051906, rs1057516685, rs1555244367, rs28940872, rs368469075, rs1057516436, rs765758808, rs387906308, rs796051905, rs1057516606, rs1226857910, rs121908006, rs1057516967, rs1057516639, rs1555244366 View all (30 more)	N/A

Show/Hide Unknown Diseases (3)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Diabetes	Type 2 diabetes	N/A	N/A	GWAS
Diabetes Mellitus	Type 2 diabetes mellitus	N/A	N/A	ClinVar
Schizophrenia	Schizophrenia	N/A	N/A	GWAS

Show/Hide Text Mining Associations (17)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Adult onset citrullinemia type 2	Associate	36787440
Carcinoma Hepatocellular	Associate	35196258, 35286894
Chanarin Dorfman Syndrome	Associate	36207828, 40225143
Colorectal Neoplasms	Associate	31949199, 36552870
Colorectal Neoplasms	Inhibit	34790035
Diabetes Mellitus Type 2	Associate	21211036
Ethylmalonic encephalopathy	Associate	16183799
Immunologic Deficiency Syndromes	Associate	26110041, 29678161
Inflammatory Bowel Diseases	Associate	31211831
Kidney Calculi	Associate	32381601
Lung Diseases	Associate	32593204
Medium chain acyl CoA dehydrogenase deficiency	Associate	37667308, 8102510
Multiple Acyl Coenzyme A Dehydrogenase Deficiency	Associate	16183799, 38103157
Neoplasms	Associate	34790035
Neurologic Manifestations	Associate	33973257
Pulmonary Disease Chronic Obstructive	Associate	32593204
Short chain Acyl CoA dehydrogenase deficiency	Associate	1692038, 23155713, 26110041, 29678161, 32253862, 36207828, 36207829, 36787440, 8102510

ACADS (acyl-CoA dehydrogenase short chain)