Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
346007
Gene name Gene Name - the full gene name approved by the HGNC.
Eyes shut homolog
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
EYS
Synonyms (NCBI Gene) Gene synonyms aliases
C6orf178, C6orf179, C6orf180, EGFL10, EGFL11, RP25, SPAM, bA166P24.2, bA307F22.3, bA74E24.1, dJ1018A4.2, dJ22I17.2, dJ303F19.1
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6q12
Summary Summary of gene provided in NCBI Entrez Gene.
The product of this gene contains multiple epidermal growth factor (EGF)-like and LamG domains. The protein is expressed in the photoreceptor layer of the retina, and the gene is mutated in autosomal recessive retinitis pigmentosa. Multiple transcript var
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs12663916 G>A,T Pathogenic, benign, likely-benign Missense variant, synonymous variant, genic downstream transcript variant, coding sequence variant
rs112822256 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs137853189 C>A Pathogenic Genic downstream transcript variant, stop gained, coding sequence variant
rs142450703 C>T Likely-pathogenic, uncertain-significance Genic downstream transcript variant, missense variant, coding sequence variant
rs143327210 G>C Benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT023100 hsa-miR-124-3p Microarray 18668037
MIRT527609 hsa-miR-494-3p PAR-CLIP 22012620
MIRT527608 hsa-miR-4680-5p PAR-CLIP 22012620
MIRT527607 hsa-miR-376a-5p PAR-CLIP 22012620
MIRT527606 hsa-miR-510-3p PAR-CLIP 22012620
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IEA
GO:0005509 Function Calcium ion binding IEA
GO:0005576 Component Extracellular region IEA
GO:0005737 Component Cytoplasm IEA
GO:0005813 Component Centrosome IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
612424 21555 ENSG00000188107
Protein
UniProt ID Q5T1H1
Protein name Protein eyes shut homolog (Epidermal growth factor-like protein 10) (EGF-like protein 10) (Epidermal growth factor-like protein 11) (EGF-like protein 11) (Protein spacemaker homolog)
Protein function Required to maintain the integrity of photoreceptor cells (PubMed:18836446). Specifically required for normal morphology of the photoreceptor ciliary pocket, and might thus facilitate protein trafficking between the photoreceptor inner and outer
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00008 EGF 176 210 EGF-like domain Domain
PF00008 EGF 685 712 EGF-like domain Domain
PF12661 hEGF 742 763 Human growth factor-like EGF Domain
PF00008 EGF 775 805 EGF-like domain Domain
PF12661 hEGF 899 920 Human growth factor-like EGF Domain
PF00008 EGF 932 962 EGF-like domain Domain
PF00008 EGF 1008 1038 EGF-like domain Domain
PF12661 hEGF 1088 1109 Human growth factor-like EGF Domain
PF00008 EGF 1121 1157 EGF-like domain Domain
PF12661 hEGF 1170 1191 Human growth factor-like EGF Domain
PF02210 Laminin_G_2 1911 2045 Laminin G domain Domain
PF00008 EGF 2103 2138 EGF-like domain Domain
PF02210 Laminin_G_2 2179 2317 Laminin G domain Domain
PF02210 Laminin_G_2 2455 2585 Laminin G domain Domain
PF00008 EGF 2614 2644 EGF-like domain Domain
PF00008 EGF 2652 2687 EGF-like domain Domain
PF02210 Laminin_G_2 2745 2877 Laminin G domain Domain
PF12661 hEGF 2905 2926 Human growth factor-like EGF Domain
PF02210 Laminin_G_2 3007 3141 Laminin G domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in retina (at protein level) (PubMed:18836446, PubMed:18976725, PubMed:27737822, PubMed:27846257). Isoform 1: Detected in retina (PubMed:27846257). Isoform 2: Detected in retina (PubMed:27846257). Isoform 3: Strongly expresse
Sequence
MTDKSIVILSLMVFHSSFINGKTCRRQLVEEWHPQPSSYVVNWTLTENICLDFYRDCWFL
GVNTKIDTSGNQAVPQICPLQIQLGDILVISSEPSLQFPEINLMNVSETSFVGCVQNTTT
EDQLLFGCRLKGMHTVNSKWLSVGTHYFITVMASGPSPCPLGLRLNVTVKQQFCQESLSS
EFCSGHGKCLSEAWSKTYSCHCQPPFSGKY
CQELDACSFKPCKNNGSCINKRENWDEQAY
ECVCHPPFTGKNCSEIIGQCQPHVCFHGNCSNITSNSFICECDEQFSGPFCEVSAKPCVS
LLFWKRGICPNSSSAYTYECPKGSSSQNGETDVSEFSLVPCQNGTDCIKISNDVMCICSP
IFTDLLCKSIQTSCESFPLRNNATCKKCEKDYPCSCISGFTEKNCEKAIDHCKLLSINCL
NEEWCFNIIGRFKYVCIPGCTKNPCWFLKNVYLIHQHLCYCGVTFHGICQDKGPAQFEYV
WQLGFAGSEGEKCQGVIDAYFFLAANCTEDATYVNDPEDNNSSCWFPHEGTKEICANGCS
CLSEEDSQEYRYLCFLRWAGNMYLENTTDDQENECQHEAVCKDEINRPRCSCSLSYIGRL
CVVNVDYCLGNHSISVHGLCLALSHNCNCSGLQRYERNICEIDTEDCKSASCKNGTTSTH
LRGYFFRKCVPGFKGTQCEIDIDECASHPCKNGATCIDQPGNYFCQCVPPFKVVDGFSCL
CNPGYVGIRCEQDIDDCILNACEHNSTCKDLHLSYQCVCLSDWEGNFCEQESNECKMNPC
KNNSTCTDLYKSYRCECTSGWTGQN
CSEEINECDSDPCMNGGLCHESTIPGQFVCLCPPL
YTGQFCHQRYNLCDLLHNPCRNNSTCLALVDANQHCICREEFEGKNCEIDVKDCLFLSCQ
DYGDCEDMVNNFRCICRPGF
SGSLCEIEINECSSEPCKNNGTCVDLTNRFFCNCEPEYHG
PF
CELDVNKCKISPCLDEENCVYRTDGYNCLCAPGYTGINCEINLDECLSEPCLHDGVCI
DGINHYTCDCKSGFFGTH
CETNANDCLSNPCLHGRCTELINEYPCSCDADGTSTQCKIKI
NDCTSIPCMNEGFCQKSAHGFTCICPRGYTGAYCEKSIDNCAEPELNSVICLNGGICVDG
PGHTFDCRCLPGFSGQF
CEININECSSSPCLHGADCEDHINGYVCKCQPGWSGHHCENEL
ECIPNSCVHELCMENEPGSTCLCTPGFMTCSIGLLCGDEIRRITCLTPIFQRTDPISTQT
YTIPPSETLVSSFPSIKATRIPAIMDTYPVDQGPKQTGIVKHDILPTTGLATLRISTPLE
SYLLQELIVTRELSAKHSLLSSADVSSSRFLNFGIRDPAQIVQDKTSVSHMPIRTSAATL
GFFFPDRRARTPFIMSSLMSDFIFPTQSLLFENCQTVALSATPTTSVIRSIPGADIELNR
QSLLSRGFLLIAASISATPVVSRGAQEDIEEYSADSLISRREHWRLLSPSMSPIFPAKVI
ISKQVTILNSSALHRFSTKAFNPSEYQAITEASSNQRLTNIKSQAADSLRELSQTCATCS
MTEIKSSREFSDQVLHSKQSHFYETFWMNSAILASWYALMGAQTITSGHSFSSATEITPS
VAFTEVPSLFPSKKSAKRTILSSSLEESITLSSNLDVNLCLDKTCLSIVPSQTISSDLMN
SDLTSKMTTDELSVSENILKLLKIRQYGITMGPTEVLNQESLLDMEKSKGSHTLFKLHPS
DSSLDFELNLQIYPDVTLKTYSEITHANDFKNNLPPLTGSVPDFSEVTTNVAFYTVSATP
ALSIQTSSSMSVIRPDWPYFTDYMTSLKKEVKTSSEWSKWELQPSVQYQEFPTASRHLPF
TRSLTLSSLESILAPQRLMISDFSCVRYYGDSYLEFQNVALNPQNNISLEFQTFSSYGLL
LYVKQDSNLVDGFFIQLFIENGTLKYHFYCPGEAKFKSINTTVRVDNGQKYTLLIRQELD
PCNAELTILGRNTQICESINHVLGKPLPKSGSVFIGGFPDLHGKIQMPVPVKNFTGCIEV
IEINN
WRSFIPSKAVKNYHINNCRSQGFMLSPTASFVDASDVTQGVDTMWTSVSPSVAAP
SVCQQDVCHNGGTCHAIFLSSGIVSFQCDCPLHFTGRFCEKDAGLFFPSFNGNSYLELPF
LKFVLEKEHNRTVTIYLTIKTNSLNGTILYSNGNNCGKQFLHLFLVEGRPSVKYGCGNSQ
NILTVSANYSINTNAFTPITIRYTTPVGSPGVVCMIEMTADGKPPVQKKDTEISHASQAY
FESMFLGHIPANVQIHKKAGPVYGFRGCILDLQVNNK
EFFIIDEARHGKNIENCHVPWCA
HHLCRNNGTCISDNENLFCECPRLYSGKLCQFASCENNPCGNGATCVPKSGTDIVCLCPY
GRSGPLCTDAINITQPRFSGTDAFGYTSFLAYSRISDISFHYEFHLKFQLANNHSALQNN
LIFFTGQKGHGLNGDDFLAVGLLNGSVVYSYNLGSGIASIRSEPLNLSLGVHTVHLGKFF
QEGWLKVDDHKNKSIIAPGRLVGLNVFSQFYVGGYSEYTPDLLPNGADFKNGFQGCIFTL
QVRTE
KDGHFRGLGNPEGHPNAGRSVGQCHASPCSLMKCGNGGTCIESGTSVYCNCTTGW
KGSF
CTETVSTCDPEHDPPHHCSRGATCISLPHGYTCFCPLGTTGIYCEQALILIVILEK
PKPAERKVKKEALSISDPSFRSNELSWMSFASFHVRKKTHIQLQFQPLAADGILFYAAQH
LKAQSGDFLCISLVNSSVQLRYNLGDRTIILETLQKVTINGSTWHIIKAGRVGAEGYLDL
DGINVTEKASTKMSSLDTNTDFYIGGVSSLNLVNPMAIENEPVGFQGCIRQVIINNQ
ELQ
LTEFGAKGGSNVGDCDGTACGYNTCRNGGECTVNGTTFSCRCLPDWAGNTCNQSVSCLNN
LCLHQSLCIPDQSFSYSCLCTLGWVGRYCENKTSFSTAKFMGNSYIKYIDPNYRMRNLQF
TTISLNFSTTKTEGLIVWMGIAQNEENDFLAIGLHNQTLKIAVNLGERISVPMSYNNGTF
CCNKWHHVVVIQNQTLIKAYINNSLILSEDIDPHKNFVALNYDGICYLGGFEYGRKVNIV
TQEIFKTNFVGKIKDVVFFQE
PKNIELIKLEGYNVYDGDEQNEVT
Sequence length 3165
Interactions View interactions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Macular dystrophy macular dystrophy rs1562140604, rs868349465 N/A
retinal dystrophy Retinal dystrophy rs527236065, rs1766009155, rs373441420, rs1768346880, rs1766383947, rs181169439, rs143994166, rs749909863, rs770748359, rs1375767063, rs371032798, rs752683070, rs909730457, rs527236066, rs750840208
View all (82 more)
N/A
Retinitis Pigmentosa retinitis pigmentosa, retinitis pigmentosa 25, Autosomal recessive retinitis pigmentosa rs771640639, rs1326370032, rs1582139965, rs770748359, rs764163418, rs371032798, rs1562109990, rs752683070, rs1562263385, rs1561965266, rs527236066, rs750840208, rs1582376398, rs199740930, rs776564041
View all (152 more)
N/A
Retinitis Punctata Albescens retinitis punctata albescens rs1582930081 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Central Areolar Choroidal Dystrophy central areolar choroidal dystrophy N/A N/A ClinVar
Diabetes Type 2 diabetes N/A N/A GWAS
Insomnia Insomnia N/A N/A GWAS
Melanoma Melanoma N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Astigmatism Associate 35109811
Blood Coagulation Disorders Inherited Associate 32218477
Capsule Opacification Associate 31944634
Carcinoma Renal Cell Associate 24479813
Cardiotoxicity Associate 29247589
Cataract Associate 34689181, 40725401
Color Vision Defects Associate 31944634
Cone Rod Dystrophies Associate 20554613, 29550188, 32218477
Diabetes Mellitus Type 2 Associate 36674502
Disease Associate 34689181, 39970144