Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
343035
Gene name Gene Name - the full gene name approved by the HGNC.
RD3 regulator of GUCY2D
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
RD3
Synonyms (NCBI Gene) Gene synonyms aliases
C1orf36, LCA12
Disease Acronyms (UniProt) Disease acronyms from UniProt database
LCA12
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q32.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a retinal protein that is associated with promyelocytic leukemia-gene product (PML) bodies in the nucleus. Mutations in this gene cause Leber congenital amaurosis type 12, a disease that results in retinal degeneration. Alternative splic
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs146420268 G>A,T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs386834260 C>A,T Pathogenic Splice donor variant
rs762631020 G>A,T Pathogenic Stop gained, synonymous variant, coding sequence variant
rs786205148 G>A Pathogenic Coding sequence variant, stop gained
rs786205149 TC>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT710191 hsa-miR-329-5p HITS-CLIP 19536157
MIRT710190 hsa-miR-6847-5p HITS-CLIP 19536157
MIRT710189 hsa-miR-4257 HITS-CLIP 19536157
MIRT710188 hsa-miR-202-5p HITS-CLIP 19536157
MIRT710187 hsa-miR-3692-3p HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment ISS
GO:0001917 Component Photoreceptor inner segment ISS
GO:0005515 Function Protein binding IPI 21078983, 25416956, 29515371, 31515488, 32296183
GO:0005634 Component Nucleus IDA 29030614
GO:0005737 Component Cytoplasm IDA 29030614
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
180040 19689 ENSG00000198570
Protein
UniProt ID Q7Z3Z2
Protein name Protein RD3 (Retinal degeneration protein 3)
Protein function Plays a critical role in the regulation of enzymes involved in nucleotide cycle in photoreceptors (PubMed:21078983, PubMed:21928830, PubMed:27471269, PubMed:29515371, PubMed:30559291). Inhibits the basal catalytic activity and the GCAP-stimulate
PDB 6DRF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14473 RD3 5 133 RD3 protein Family
Tissue specificity TISSUE SPECIFICITY: Expressed in retina (PubMed:12914764). Widely expressed (at protein level) (PubMed:29030614). In the retina the strongest immunoreactivity is detected in the inner half of the cytoplasmic portion of the photoreceptor layer, where rods
Sequence
Sequence length 195
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Keratoconus Keratoconus rs273585637, rs273585632, rs273585616, rs273585618, rs281865144, rs281865150, rs1553500862, rs756938019
Leber congenital amaurosis Leber Congenital Amaurosis, LEBER CONGENITAL AMAUROSIS 12 (disorder), Leber congenital amaurosis rs386834252, rs386834253, rs121918165, rs62635288, rs281865192, rs137852833, rs137852834, rs137852835, rs2137919146, rs267606719, rs80044281, rs386834241, rs75895925, rs386834243, rs750962965
View all (532 more)
17186464, 25685757
Unknown
Disease term Disease name Evidence References Source
Leber Congenital Amaurosis Leber congenital amaurosis 12 GenCC
Hypertension Hypertension GWAS
Associations from Text Mining
Disease Name Relationship Type References
Cone Rod Dystrophies Associate 22531706
Leber Congenital Amaurosis Associate 18936139, 22531706, 23308101, 24516651
Leber Congenital Amaurosis 12 Associate 38479331, 40188639
Neoplasms Associate 29030614
Nephrosis Lipoid Associate 22531706
Nerve Degeneration Associate 23308101
Retinal Dystrophies Associate 22531706
Retinal Dystrophy Early Onset Severe Associate 22531706
Retinitis Pigmentosa Associate 24516651