ZNF546 (zinc finger protein 546)

Gene

• Entrez ID: 339327
• Gene name: Zinc finger protein 546
• Gene symbol: ZNF546
• Synonyms (NCBI Gene): ZNF49
• Chromosome: 19
• Chromosome location: 19q13.2

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT717929	hsa-miR-7849-3p	HITS-CLIP	19536157
MIRT717928	hsa-miR-300	HITS-CLIP	19536157
MIRT717927	hsa-miR-381-3p	HITS-CLIP	19536157
MIRT717926	hsa-miR-4666a-3p	HITS-CLIP	19536157
MIRT717925	hsa-let-7a-3p	HITS-CLIP	19536157
MIRT717924	hsa-let-7b-3p	HITS-CLIP	19536157
MIRT717923	hsa-let-7f-1-3p	HITS-CLIP	19536157
MIRT717922	hsa-miR-98-3p	HITS-CLIP	19536157
MIRT717921	hsa-miR-7977	HITS-CLIP	19536157
MIRT646787	hsa-miR-6890-3p	HITS-CLIP	23824327
MIRT663486	hsa-miR-6787-3p	HITS-CLIP	23824327
MIRT637399	hsa-miR-4772-3p	HITS-CLIP	23824327
MIRT637398	hsa-miR-4769-3p	HITS-CLIP	23824327
MIRT637397	hsa-miR-6817-5p	HITS-CLIP	23824327
MIRT637396	hsa-miR-4252	HITS-CLIP	23824327
MIRT637395	hsa-miR-4727-5p	HITS-CLIP	23824327
MIRT646787	hsa-miR-6890-3p	HITS-CLIP	23824327
MIRT637399	hsa-miR-4772-3p	HITS-CLIP	23824327
MIRT637399	hsa-miR-4772-3p	HITS-CLIP	23824327
MIRT637398	hsa-miR-4769-3p	HITS-CLIP	23824327
MIRT637397	hsa-miR-6817-5p	HITS-CLIP	23824327
MIRT637396	hsa-miR-4252	HITS-CLIP	23824327
MIRT637395	hsa-miR-4727-5p	HITS-CLIP	23824327
MIRT495775	hsa-miR-6808-5p	PAR-CLIP	22012620
MIRT495774	hsa-miR-6893-5p	PAR-CLIP	22012620
MIRT495773	hsa-miR-940	PAR-CLIP	22012620
MIRT529470	hsa-miR-1182	PAR-CLIP	22012620
MIRT529469	hsa-miR-4781-3p	PAR-CLIP	22012620
MIRT529468	hsa-miR-1304-3p	PAR-CLIP	22012620
MIRT529467	hsa-miR-1827	PAR-CLIP	22012620
MIRT529466	hsa-miR-1207-5p	PAR-CLIP	22012620
MIRT529465	hsa-miR-4763-3p	PAR-CLIP	22012620
MIRT529464	hsa-miR-6501-5p	PAR-CLIP	22012620
MIRT529463	hsa-miR-4423-5p	PAR-CLIP	22012620
MIRT529462	hsa-miR-744-3p	PAR-CLIP	22012620
MIRT495779	hsa-miR-21-3p	PAR-CLIP	22291592
MIRT495778	hsa-miR-3591-3p	PAR-CLIP	22291592
MIRT495777	hsa-miR-1910-3p	PAR-CLIP	22291592
MIRT495776	hsa-miR-6511a-5p	PAR-CLIP	22291592
MIRT495775	hsa-miR-6808-5p	PAR-CLIP	22291592
MIRT495774	hsa-miR-6893-5p	PAR-CLIP	22291592
MIRT495773	hsa-miR-940	PAR-CLIP	22291592
MIRT495772	hsa-miR-2682-5p	PAR-CLIP	22291592
MIRT495771	hsa-miR-34b-5p	PAR-CLIP	22291592
MIRT495770	hsa-miR-449c-5p	PAR-CLIP	22291592
MIRT495769	hsa-miR-4257	PAR-CLIP	22291592
MIRT495768	hsa-miR-2467-3p	PAR-CLIP	22291592
MIRT495767	hsa-miR-192-3p	PAR-CLIP	22291592
MIRT495766	hsa-miR-4776-3p	PAR-CLIP	22291592
MIRT495779	hsa-miR-21-3p	PAR-CLIP	22291592
MIRT495778	hsa-miR-3591-3p	PAR-CLIP	22291592
MIRT495777	hsa-miR-1910-3p	PAR-CLIP	22291592
MIRT495776	hsa-miR-6511a-5p	PAR-CLIP	22291592
MIRT495775	hsa-miR-6808-5p	PAR-CLIP	22291592
MIRT495774	hsa-miR-6893-5p	PAR-CLIP	22291592
MIRT495773	hsa-miR-940	PAR-CLIP	22291592
MIRT495772	hsa-miR-2682-5p	PAR-CLIP	22291592
MIRT495771	hsa-miR-34b-5p	PAR-CLIP	22291592
MIRT495770	hsa-miR-449c-5p	PAR-CLIP	22291592
MIRT495769	hsa-miR-4257	PAR-CLIP	22291592
MIRT495768	hsa-miR-2467-3p	PAR-CLIP	22291592
MIRT495767	hsa-miR-192-3p	PAR-CLIP	22291592
MIRT495766	hsa-miR-4776-3p	PAR-CLIP	22291592
MIRT717929	hsa-miR-7849-3p	HITS-CLIP	19536157
MIRT717928	hsa-miR-300	HITS-CLIP	19536157
MIRT717927	hsa-miR-381-3p	HITS-CLIP	19536157
MIRT717926	hsa-miR-4666a-3p	HITS-CLIP	19536157
MIRT717925	hsa-let-7a-3p	HITS-CLIP	19536157
MIRT717924	hsa-let-7b-3p	HITS-CLIP	19536157
MIRT717923	hsa-let-7f-1-3p	HITS-CLIP	19536157
MIRT717922	hsa-miR-98-3p	HITS-CLIP	19536157
MIRT717921	hsa-miR-7977	HITS-CLIP	19536157
MIRT646787	hsa-miR-6890-3p	HITS-CLIP	23824327
MIRT663486	hsa-miR-6787-3p	HITS-CLIP	23824327
MIRT637399	hsa-miR-4772-3p	HITS-CLIP	23824327
MIRT637398	hsa-miR-4769-3p	HITS-CLIP	23824327
MIRT637397	hsa-miR-6817-5p	HITS-CLIP	23824327
MIRT637396	hsa-miR-4252	HITS-CLIP	23824327
MIRT637395	hsa-miR-4727-5p	HITS-CLIP	23824327
MIRT646787	hsa-miR-6890-3p	HITS-CLIP	23824327
MIRT637399	hsa-miR-4772-3p	HITS-CLIP	23824327
MIRT637399	hsa-miR-4772-3p	HITS-CLIP	23824327
MIRT637398	hsa-miR-4769-3p	HITS-CLIP	23824327
MIRT637397	hsa-miR-6817-5p	HITS-CLIP	23824327
MIRT637396	hsa-miR-4252	HITS-CLIP	23824327
MIRT637395	hsa-miR-4727-5p	HITS-CLIP	23824327
MIRT495775	hsa-miR-6808-5p	PAR-CLIP	22012620
MIRT495774	hsa-miR-6893-5p	PAR-CLIP	22012620
MIRT495773	hsa-miR-940	PAR-CLIP	22012620
MIRT529470	hsa-miR-1182	PAR-CLIP	22012620
MIRT529469	hsa-miR-4781-3p	PAR-CLIP	22012620
MIRT529468	hsa-miR-1304-3p	PAR-CLIP	22012620
MIRT529467	hsa-miR-1827	PAR-CLIP	22012620
MIRT529466	hsa-miR-1207-5p	PAR-CLIP	22012620
MIRT529465	hsa-miR-4763-3p	PAR-CLIP	22012620
MIRT529464	hsa-miR-6501-5p	PAR-CLIP	22012620
MIRT529463	hsa-miR-4423-5p	PAR-CLIP	22012620
MIRT529462	hsa-miR-744-3p	PAR-CLIP	22012620
MIRT495779	hsa-miR-21-3p	PAR-CLIP	22291592
MIRT495778	hsa-miR-3591-3p	PAR-CLIP	22291592
MIRT495777	hsa-miR-1910-3p	PAR-CLIP	22291592
MIRT495776	hsa-miR-6511a-5p	PAR-CLIP	22291592
MIRT495775	hsa-miR-6808-5p	PAR-CLIP	22291592
MIRT495774	hsa-miR-6893-5p	PAR-CLIP	22291592
MIRT495773	hsa-miR-940	PAR-CLIP	22291592
MIRT495772	hsa-miR-2682-5p	PAR-CLIP	22291592
MIRT495771	hsa-miR-34b-5p	PAR-CLIP	22291592
MIRT495770	hsa-miR-449c-5p	PAR-CLIP	22291592
MIRT495769	hsa-miR-4257	PAR-CLIP	22291592
MIRT495768	hsa-miR-2467-3p	PAR-CLIP	22291592
MIRT495767	hsa-miR-192-3p	PAR-CLIP	22291592
MIRT495766	hsa-miR-4776-3p	PAR-CLIP	22291592
MIRT495779	hsa-miR-21-3p	PAR-CLIP	22291592
MIRT495778	hsa-miR-3591-3p	PAR-CLIP	22291592
MIRT495777	hsa-miR-1910-3p	PAR-CLIP	22291592
MIRT495776	hsa-miR-6511a-5p	PAR-CLIP	22291592
MIRT495775	hsa-miR-6808-5p	PAR-CLIP	22291592
MIRT495774	hsa-miR-6893-5p	PAR-CLIP	22291592
MIRT495773	hsa-miR-940	PAR-CLIP	22291592
MIRT495772	hsa-miR-2682-5p	PAR-CLIP	22291592
MIRT495771	hsa-miR-34b-5p	PAR-CLIP	22291592
MIRT495770	hsa-miR-449c-5p	PAR-CLIP	22291592
MIRT495769	hsa-miR-4257	PAR-CLIP	22291592
MIRT495768	hsa-miR-2467-3p	PAR-CLIP	22291592
MIRT495767	hsa-miR-192-3p	PAR-CLIP	22291592
MIRT495766	hsa-miR-4776-3p	PAR-CLIP	22291592
MIRT1528732	hsa-miR-1178	CLIP-seq
MIRT1528733	hsa-miR-1200	CLIP-seq
MIRT1528734	hsa-miR-125a-3p	CLIP-seq
MIRT1528735	hsa-miR-146b-3p	CLIP-seq
MIRT1528736	hsa-miR-197	CLIP-seq
MIRT1528737	hsa-miR-217	CLIP-seq
MIRT1528738	hsa-miR-22	CLIP-seq
MIRT1528739	hsa-miR-24	CLIP-seq
MIRT1528740	hsa-miR-2681	CLIP-seq
MIRT1528741	hsa-miR-3123	CLIP-seq
MIRT1528742	hsa-miR-3154	CLIP-seq
MIRT1528743	hsa-miR-3173-5p	CLIP-seq
MIRT1528744	hsa-miR-3179	CLIP-seq
MIRT1528745	hsa-miR-3187-3p	CLIP-seq
MIRT1528746	hsa-miR-320a	CLIP-seq
MIRT1528747	hsa-miR-320b	CLIP-seq
MIRT1528748	hsa-miR-320c	CLIP-seq
MIRT1528749	hsa-miR-320d	CLIP-seq
MIRT1528750	hsa-miR-330-3p	CLIP-seq
MIRT1528751	hsa-miR-3545-3p	CLIP-seq
MIRT1528752	hsa-miR-3663-5p	CLIP-seq
MIRT1528753	hsa-miR-3925-5p	CLIP-seq
MIRT1528754	hsa-miR-3934	CLIP-seq
MIRT1528755	hsa-miR-3936	CLIP-seq
MIRT1528756	hsa-miR-411	CLIP-seq
MIRT1528757	hsa-miR-4269	CLIP-seq
MIRT1528758	hsa-miR-4284	CLIP-seq
MIRT1528759	hsa-miR-4292	CLIP-seq
MIRT1528760	hsa-miR-4324	CLIP-seq
MIRT1528761	hsa-miR-4429	CLIP-seq
MIRT1528762	hsa-miR-4435	CLIP-seq
MIRT1528763	hsa-miR-4438	CLIP-seq
MIRT1528764	hsa-miR-4635	CLIP-seq
MIRT1528765	hsa-miR-4680-5p	CLIP-seq
MIRT1528766	hsa-miR-4686	CLIP-seq
MIRT1528767	hsa-miR-4701-5p	CLIP-seq
MIRT1528768	hsa-miR-4716-5p	CLIP-seq
MIRT1528769	hsa-miR-4755-3p	CLIP-seq
MIRT1528770	hsa-miR-486-3p	CLIP-seq
MIRT1528771	hsa-miR-5095	CLIP-seq
MIRT1528772	hsa-miR-5096	CLIP-seq
MIRT1528773	hsa-miR-544b	CLIP-seq
MIRT1528774	hsa-miR-548s	CLIP-seq
MIRT1528775	hsa-miR-588	CLIP-seq
MIRT1528776	hsa-miR-599	CLIP-seq
MIRT1528777	hsa-miR-764	CLIP-seq
MIRT1528778	hsa-miR-767-3p	CLIP-seq
MIRT1528779	hsa-miR-874	CLIP-seq
MIRT1528732	hsa-miR-1178	CLIP-seq
MIRT1528734	hsa-miR-125a-3p	CLIP-seq
MIRT1528736	hsa-miR-197	CLIP-seq
MIRT1528741	hsa-miR-3123	CLIP-seq
MIRT1528742	hsa-miR-3154	CLIP-seq
MIRT1528744	hsa-miR-3179	CLIP-seq
MIRT1528745	hsa-miR-3187-3p	CLIP-seq
MIRT1528751	hsa-miR-3545-3p	CLIP-seq
MIRT1528752	hsa-miR-3663-5p	CLIP-seq
MIRT1528753	hsa-miR-3925-5p	CLIP-seq
MIRT1528754	hsa-miR-3934	CLIP-seq
MIRT1528755	hsa-miR-3936	CLIP-seq
MIRT1528756	hsa-miR-411	CLIP-seq
MIRT1528762	hsa-miR-4435	CLIP-seq
MIRT1528764	hsa-miR-4635	CLIP-seq
MIRT1528765	hsa-miR-4680-5p	CLIP-seq
MIRT1528766	hsa-miR-4686	CLIP-seq
MIRT1528767	hsa-miR-4701-5p	CLIP-seq
MIRT1528768	hsa-miR-4716-5p	CLIP-seq
MIRT1528769	hsa-miR-4755-3p	CLIP-seq
MIRT1528772	hsa-miR-5096	CLIP-seq
MIRT1528774	hsa-miR-548s	CLIP-seq
MIRT1528775	hsa-miR-588	CLIP-seq
MIRT1528777	hsa-miR-764	CLIP-seq
MIRT1528778	hsa-miR-767-3p	CLIP-seq
MIRT2159853	hsa-miR-1179	CLIP-seq
MIRT2159854	hsa-miR-122	CLIP-seq
MIRT2159855	hsa-miR-145	CLIP-seq
MIRT1528740	hsa-miR-2681	CLIP-seq
MIRT2159856	hsa-miR-3135b	CLIP-seq
MIRT2159857	hsa-miR-320e	CLIP-seq
MIRT2159858	hsa-miR-3925-3p	CLIP-seq
MIRT2159859	hsa-miR-4719	CLIP-seq
MIRT2159860	hsa-miR-4793-5p	CLIP-seq
MIRT2159861	hsa-miR-766	CLIP-seq
MIRT2159862	hsa-miR-944	CLIP-seq
MIRT2379230	hsa-miR-1206	CLIP-seq
MIRT2159854	hsa-miR-122	CLIP-seq
MIRT1528739	hsa-miR-24	CLIP-seq
MIRT1528740	hsa-miR-2681	CLIP-seq
MIRT2379231	hsa-miR-3074-5p	CLIP-seq
MIRT2159856	hsa-miR-3135b	CLIP-seq
MIRT2159857	hsa-miR-320e	CLIP-seq
MIRT1528758	hsa-miR-4284	CLIP-seq
MIRT2379232	hsa-miR-4466	CLIP-seq
MIRT2379233	hsa-miR-4695-3p	CLIP-seq
MIRT2379234	hsa-miR-4722-3p	CLIP-seq
MIRT2379235	hsa-miR-675	CLIP-seq
MIRT2159854	hsa-miR-122	CLIP-seq
MIRT1528739	hsa-miR-24	CLIP-seq
MIRT1528740	hsa-miR-2681	CLIP-seq
MIRT2159856	hsa-miR-3135b	CLIP-seq
MIRT2159857	hsa-miR-320e	CLIP-seq
MIRT1528758	hsa-miR-4284	CLIP-seq
MIRT1528771	hsa-miR-5095	CLIP-seq
MIRT2671299	hsa-miR-4289	CLIP-seq
MIRT2671300	hsa-miR-4687-3p	CLIP-seq
MIRT2671301	hsa-miR-4775	CLIP-seq
MIRT2671299	hsa-miR-4289	CLIP-seq
MIRT2671300	hsa-miR-4687-3p	CLIP-seq
MIRT2671301	hsa-miR-4775	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0003677	Function	DNA binding	IEA
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0008270	Function	Zinc ion binding	IEA
GO:0046872	Function	Metal ion binding	IEA

Other IDs

• MIM: HGNC
• HGNC: N/A
• e!Ensembl: HGNC

Protein

• UniProt ID: Q86UE3
• Protein name: Zinc finger protein 546 (Zinc finger protein 49)
• Protein function: May be involved in transcriptional regulation.
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF01352	KRAB	59 → 100	KRAB box	Family
  PF00096	zf-C2H2	217 → 239	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	245 → 267	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	273 → 295	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	301 → 323	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	329 → 351	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	357 → 379	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	385 → 407	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	413 → 435	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	441 → 463	Zinc finger, C2H2 type	Domain
  PF13912	zf-C2H2_6	469 → 494		Domain
  PF00096	zf-C2H2	497 → 519	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	525 → 547	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	553 → 575	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	581 → 603	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	609 → 631	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	637 → 659	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	665 → 687	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	721 → 743	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	777 → 799	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	805 → 827	Zinc finger, C2H2 type	Domain

• Sequence:

  MQVDPPLHGPPNDFLIFQIIPLHSLSIMPRFLWILCFSMEETQGELTSSCGSKTMANVSL
  AFRDVSIDLSQEEWECLDAVQRDLYKDVMLENYSNLVSLGYTIPKPDVITLLEQEKEPWI
  VMREGTRNWFTDLEYKYITKNLLSEKNVCKIYLSQLQTGEKSKNTIHEDTIFRNGLQCKH
  EFERQERHQMGCVSQMLIQKQISHPLHPKIHAREKSYECKECRKAFRQQSYLIQHLRIHT
  GERPYKCMECGKAFCRVGDLRVHHTIHAGERPYECKECGKAFRLHYHLTEHQRIHSGVKP
  YECKECGKAFSRVRDLRVHQTIHAGERPYECKECGKAFRLHYQLTEHQRIHTGERPYECK
  VCGKTFRVQRHISQHQKIHTGVKPYKCNECGKAFSHGSYLVQHQKIHTGEKPYECKECGK
  SFSFHAELARHRRIHTGEKPYECRECGKAFRLQTELTRHHRTHTGEKPYECKECGKAFIC
  GYQLTLHLRTHTGEIPYECKECGKTFSSRYHLTQHYRIHTGEKPYICNECGKAFRLQGEL
  TRHHRIHTCEKPYECKECGKAFIHSNQFISHQRIHTSESTYICKECGKIFSRRYNLTQHF
  KIHTGEKPYICNECGKAFRFQTELTQHHRIHTGEKPYKCTECGKAFIRSTHLTQHHRIHT
  GEKPYECTECGKTFSRHYHLTQHHRGHTGEKPYICNECGNAFICSYRLTLHQRIHTGELP
  YECKECGKTFSRRYHLTQHFRLHTGEKPYSCKECGNAFRLQAELTRHHIVHTGEKPYKCK
  ECGKAFSVNSELTRHHRIHTGEKPYQCKECGKAFIRSDQLTLHQRNHISEEVLCIM

• Sequence length: 836

Pathways

Reactome:

Generic Transcription Pathway