Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3329
Gene name Gene Name - the full gene name approved by the HGNC.
Heat shock protein family D (Hsp60) member 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HSPD1
Synonyms (NCBI Gene) Gene synonyms aliases
CPN60, GROEL, HLD4, HSP-60, HSP60, HSP65, HuCHA60, SPG13
Disease Acronyms (UniProt) Disease acronyms from UniProt database
HLD4, SPG13
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q33.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the chaperonin family. The encoded mitochondrial protein may function as a signaling molecule in the innate immune system. This protein is essential for the folding and assembly of newly imported proteins in the mitochondria.
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs61755731 C>T Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs66468541 C>T Pathogenic Coding sequence variant, missense variant
rs863224042 T>C Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT003976 hsa-miR-1-3p Luciferase reporter assay 17715156
MIRT003976 hsa-miR-1-3p Luciferase reporter assay 17715156
MIRT003976 hsa-miR-1-3p Luciferase reporter assay 17715156
MIRT003976 hsa-miR-1-3p Luciferase reporter assay 17715156
MIRT003976 hsa-miR-1-3p Review 19815577
Transcription factors
Transcription factor Regulation Reference
RUNX3 Repression 17956589
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001530 Function Lipopolysaccharide binding IDA 17164250
GO:0002039 Function P53 binding IPI 18086682
GO:0002755 Process MyD88-dependent toll-like receptor signaling pathway IDA 16148103
GO:0002842 Process Positive regulation of T cell mediated immune response to tumor cell IDA 10663613
GO:0003688 Function DNA replication origin binding ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
118190 5261 ENSG00000144381
Protein
UniProt ID P10809
Protein name 60 kDa heat shock protein, mitochondrial (EC 5.6.1.7) (60 kDa chaperonin) (Chaperonin 60) (CPN60) (Heat shock protein 60) (HSP-60) (Hsp60) (Heat shock protein family D member 1) (HuCHA60) (Mitochondrial matrix protein P1) (P60 lymphocyte protein)
Protein function Chaperonin implicated in mitochondrial protein import and macromolecular assembly. Together with Hsp10, facilitates the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded p
PDB 4PJ1 , 6HT7 , 6MRC , 6MRD , 7AZP , 7L7S , 8G7J , 8G7K , 8G7L , 8G7M , 8G7N , 8G7O , 8U39
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00118 Cpn60_TCP1 47 550 TCP-1/cpn60 chaperonin family Family
Sequence
Sequence length 573
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  RNA degradation
Type I diabetes mellitus
Legionellosis
Tuberculosis
Lipid and atherosclerosis
  Mitochondrial protein import
TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Adenocarcinoma Adenocarcinoma, Adenocarcinoma, Basal Cell, Adenocarcinoma, Oxyphilic, Adenocarcinoma, Tubular rs121913530, rs886039394, rs121913474 15378696
Carcinoma Carcinoma, Cribriform, Carcinoma, Granular Cell rs121912654, rs555607708, rs786202962, rs1564055259 15378696
Cardiomyopathy Cardiomyopathies, Primary, Cardiomyopathies rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
12967636
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Chromophobe carcinoma Chromophobe Renal Cell Carcinoma 15108329 ClinVar
Coronary syndrome Acute Coronary Syndrome 21751358 ClinVar
Spastic Paraplegia hereditary spastic paraplegia 13 GenCC
Schizophrenia Schizophrenia GWAS
Associations from Text Mining
Disease Name Relationship Type References
Acquired Immunodeficiency Syndrome Associate 23028910
Adenocarcinoma Associate 23839491, 27491302, 28178129
Adenocarcinoma of Lung Associate 33640883, 37189138, 37694354, 38017020
Adenoma Associate 27491302
Alzheimer Disease Associate 39201760
Antiphospholipid Syndrome Associate 18759277
Aortic Aneurysm Thoracic Associate 36291095
Aortic Valve Stenosis Associate 15120829
Arthritis Associate 1316935, 7883993
Arthritis Juvenile Associate 12847694, 1316935, 7883993