Gene Gene information from NCBI Gene database.
Entrez ID 326
Gene name Autoimmune regulator
Gene symbol AIRE
Synonyms (NCBI Gene)
AIRE1APECEDAPS1APSIPGA1
Chromosome 21
Chromosome location 21q22.3
Summary This gene encodes a transcriptional regulator that forms nuclear bodies and interacts with the transcriptional coactivator CREB binding protein. The encoded protein plays an important role in immunity by regulating the expression of autoantigens and negat
SNPs SNP information provided by dbSNP.
82
SNP ID Visualize variation Clinical significance Consequence
rs41277546 C>T Benign, conflicting-interpretations-of-pathogenicity Intron variant
rs72650680 C>T Benign, conflicting-interpretations-of-pathogenicity Intron variant
rs74162061 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs121434254 C>A,T Pathogenic Synonymous variant, coding sequence variant, stop gained
rs121434255 A>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
40
miRTarBase ID miRNA Experiments Reference
MIRT2169389 hsa-miR-122 CLIP-seq
MIRT2169390 hsa-miR-216a CLIP-seq
MIRT2169391 hsa-miR-4269 CLIP-seq
MIRT2169392 hsa-miR-4438 CLIP-seq
MIRT2169393 hsa-miR-4463 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
DAXX Repression 20185822
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
53
GO ID Ontology Definition Evidence Reference
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 11533054
GO:0001673 Component Male germ cell nucleus IEA
GO:0001674 Component Female germ cell nucleus IEA
GO:0002458 Process Peripheral T cell tolerance induction IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607358 360 ENSG00000160224
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43918
Protein name Autoimmune regulator (Autoimmune polyendocrinopathy candidiasis ectodermal dystrophy protein) (APECED protein)
Protein function Transcription factor playing an essential role to promote self-tolerance in the thymus by regulating the expression of a wide array of self-antigens that have the commonality of being tissue-restricted in their expression pattern in the peripher
PDB 1XWH , 2KE1 , 2KFT , 2LRI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03172 HSR 3 103 HSR domain Domain
PF01342 SAND 196 249 SAND domain Family
PF00628 PHD 298 343 PHD-finger Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Expressed at higher level in thymus (medullary epithelial cells and monocyte-dendritic cells), pancreas, adrenal cortex and testis. Expressed at lower level in the spleen, fetal liver and lymph nodes. In secondary lym
Sequence
MATDAALRRLLRLHRTEIAVAVDSAFPLLHALADHDVVPEDKFQETLHLKEKEGCPQAFH
ALLSWLLTQDSTAILDFWRVLFKDYNLERYGRLQPILDSFPKD
VDLSQPRKGRKPPAVPK
ALVPPPRLPTKRKASEEARAAAPAALTPRGTASPGSQLKAKPPKKPESSAEQQRLPLGNG
IQTMSASVQRAVAMSSGDVPGARGAVEGILIQQVFESGGSKKCIQVGGEFYTPSKFEDSG
SGKNKARSS
SGPKPLVRAKGAQGAAPGGGEARLGQQGSVPAPLALPSDPQLHQKNEDECA
VCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA
TVQEVQPRAEEPRPQEP
PVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCV
GPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT
PAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPA
APFPS
Sequence length 545
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Ubiquitin mediated proteolysis
Primary immunodeficiency
 
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1199
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
AIRE-related disorder Pathogenic; Likely pathogenic rs2146375836, rs121434254, rs386833675, rs138489664, rs179363889, rs179363877 RCV004754818
RCV003421900
RCV003407265
RCV003905497
RCV004754292
RCV004754293
Autoimmune polyglandular syndrome type 1, with reversible metaphyseal dysplasia Likely pathogenic; Pathogenic rs386833675, rs387906295 RCV000003473
RCV000003479
Inherited Immunodeficiency Diseases Pathogenic rs121434258 RCV001027543
Polyglandular autoimmune syndrome, type 1 Likely pathogenic; Pathogenic rs2146375964, rs1184559866, rs1568926472, rs746101086, rs1179261094, rs143952576, rs2146379302, rs2146379356, rs1482020075, rs2146383463, rs2146374989, rs2146385757, rs866898746, rs2146377702, rs2146379725
View all (160 more)
RCV001377282
RCV001379865
RCV001381594
RCV001388926
RCV001389498
RCV001388127
RCV001390187
RCV001389532
RCV001383460
RCV001390699
RCV001783349
RCV001785904
RCV001939218
RCV002046565
RCV001904436
RCV001947793
RCV001899949
RCV001906291
RCV002017463
RCV002017393
RCV001960086
RCV001976596
RCV002022142
RCV002007164
RCV001942246
RCV001939700
RCV002037238
RCV001960685
RCV001960703
RCV001988247
RCV001951015
RCV002036245
RCV001972863
RCV001956439
RCV001952516
RCV001947002
RCV001951438
RCV002266271
RCV002306726
RCV002309573
RCV002309591
RCV002308032
RCV002308266
RCV002310156
RCV002310243
RCV002310446
RCV002310469
RCV002310573
RCV000179294
RCV000003471
RCV000049635
RCV000169129
RCV000003475
RCV000003476
RCV000003478
RCV001047339
RCV000003481
RCV003064634
RCV003050568
RCV003050569
RCV000169457
RCV000169131
RCV000169307
RCV002510430
RCV003116060
RCV002667975
RCV002727086
RCV002815818
RCV002838929
RCV002851347
RCV002856480
RCV002894335
RCV002876730
RCV002852027
RCV002941973
RCV003015578
RCV003028048
RCV003045755
RCV003043826
RCV000515133
RCV000586684
RCV000702028
RCV003326715
RCV003326723
RCV003329564
RCV003329565
RCV003329567
RCV003329568
RCV003329569
RCV003329570
RCV003447733
RCV003524214
RCV003523638
RCV003523693
RCV003523376
RCV003523377
RCV003523731
RCV003524617
RCV003636331
RCV003636306
RCV003637133
RCV003637381
RCV003635468
RCV003635499
RCV003635494
RCV003810699
RCV003827782
RCV003836388
RCV003849623
RCV003851936
RCV003990289
RCV004587984
RCV000411673
RCV000409857
RCV000410887
RCV000409889
RCV000409403
RCV000411349
RCV000411715
RCV000411502
RCV000410507
RCV000410757
RCV000409227
RCV000409587
RCV000410277
RCV000409364
RCV003522963
RCV000666247
RCV001201790
RCV000515130
RCV000029313
RCV000576629
RCV000672094
RCV000672123
RCV000665231
RCV000667023
RCV000666740
RCV000664648
RCV000666118
RCV000674104
RCV000672590
RCV000673367
RCV000666828
RCV000674283
RCV000672259
RCV000668550
RCV000665889
RCV000665514
RCV000670655
RCV000673170
RCV000672498
RCV000666886
RCV000695075
RCV000687271
RCV001045056
RCV000761489
RCV000780824
RCV000821835
RCV000822439
RCV000803575
RCV000800815
RCV000049632
RCV000049633
RCV000049634
RCV000409203
RCV000175592
RCV003522923
RCV002514297
RCV000666777
RCV001378939
RCV001037856
RCV000169178
RCV000810303
RCV003329239
RCV001061201
RCV000990354
RCV001248832
RCV001051848
RCV001051497
RCV001067755
RCV001222494
RCV001226854
RCV001241250
RCV001267736
RCV001267740
RCV001263807
RCV001263808
RCV001263809
RCV001263810
RCV001283785
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autoimmune polyglandular syndrome type 1, autosomal dominant not provided rs121434257 RCV000003477
Cholangiocarcinoma Conflicting classifications of pathogenicity rs41277546 RCV005888697
Familial cancer of breast Benign; Likely benign rs61737006 RCV005902809
Gastric cancer Conflicting classifications of pathogenicity rs41277546 RCV005888695
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
abc disease Associate 37369658
Addison Disease Associate 25402387, 29849176, 33530632, 33574239, 34003463, 34078422
Adrenal Insufficiency Associate 32557834, 34078422, 35521792
Alopecia Associate 34078422
Alopecia Neurologic Defects and Endocrinopathy Syndrome Associate 9837820
Anemia Pernicious Associate 34145262
Arthritis Rheumatoid Associate 23320549, 29129473, 30403260, 31275320, 38418155
Autoimmune Diseases Associate 12651856, 14734522, 16784312, 23643663, 24988226, 25038256, 25402387, 26084018, 26084028, 27048654, 28242760, 29666621, 30979797, 38112858, 38418155
Autoimmune Diseases of the Nervous System Associate 31275320
Autoimmune oophoritis Associate 34078422