Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	3241
Gene name Gene Name - the full gene name approved by the HGNC.	Hippocalcin like 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	HPCAL1
Synonyms (NCBI Gene) Gene synonyms aliases	BDR1, HLP2, VILIP-3
Chromosome Chromosome number	2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	2p25.1
Summary Summary of gene provided in NCBI Entrez Gene.	The protein encoded by this gene is a member of neuron-specific calcium-binding proteins family found in the retina and brain. It is highly similar to human hippocalcin protein and nearly identical to the rat and mouse hippocalcin like-1 proteins. It may

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miRTarBase ID	miRNA	Experiments	Reference
MIRT025893	hsa-miR-7-5p	Microarray	19073608
MIRT487669	hsa-miR-2278	PAR-CLIP	20371350
MIRT487668	hsa-miR-6165	PAR-CLIP	20371350
MIRT487667	hsa-miR-4747-3p	PAR-CLIP	20371350
MIRT487662	hsa-miR-873-5p	PAR-CLIP	20371350
MIRT487666	hsa-miR-1247-3p	PAR-CLIP	20371350
MIRT487665	hsa-miR-4532	PAR-CLIP	20371350
MIRT487664	hsa-miR-6784-5p	PAR-CLIP	20371350
MIRT487663	hsa-miR-6746-5p	PAR-CLIP	20371350
MIRT487662	hsa-miR-873-5p	PAR-CLIP	20371350
MIRT487661	hsa-miR-1538	PAR-CLIP	20371350
MIRT487660	hsa-miR-4745-3p	PAR-CLIP	20371350
MIRT487659	hsa-miR-6731-5p	PAR-CLIP	20371350
MIRT487658	hsa-miR-8085	PAR-CLIP	20371350
MIRT487657	hsa-miR-3976	PAR-CLIP	20371350
MIRT487669	hsa-miR-2278	PAR-CLIP	23592263
MIRT487668	hsa-miR-6165	PAR-CLIP	23592263
MIRT487667	hsa-miR-4747-3p	PAR-CLIP	23592263
MIRT487662	hsa-miR-873-5p	PAR-CLIP	23592263
MIRT487666	hsa-miR-1247-3p	PAR-CLIP	23592263
MIRT487665	hsa-miR-4532	PAR-CLIP	23592263
MIRT487664	hsa-miR-6784-5p	PAR-CLIP	23592263
MIRT487663	hsa-miR-6746-5p	PAR-CLIP	23592263
MIRT487662	hsa-miR-873-5p	PAR-CLIP	23592263
MIRT487661	hsa-miR-1538	PAR-CLIP	23592263
MIRT487660	hsa-miR-4745-3p	PAR-CLIP	23592263
MIRT487659	hsa-miR-6731-5p	PAR-CLIP	23592263
MIRT487658	hsa-miR-8085	PAR-CLIP	23592263
MIRT487657	hsa-miR-3976	PAR-CLIP	23592263
MIRT487666	hsa-miR-1247-3p	PAR-CLIP	26701625
MIRT487661	hsa-miR-1538	PAR-CLIP	26701625
MIRT487669	hsa-miR-2278	PAR-CLIP	26701625
MIRT487657	hsa-miR-3976	PAR-CLIP	26701625
MIRT487665	hsa-miR-4532	PAR-CLIP	26701625
MIRT487660	hsa-miR-4745-3p	PAR-CLIP	26701625
MIRT487667	hsa-miR-4747-3p	PAR-CLIP	26701625
MIRT487668	hsa-miR-6165	PAR-CLIP	26701625
MIRT487659	hsa-miR-6731-5p	PAR-CLIP	26701625
MIRT487663	hsa-miR-6746-5p	PAR-CLIP	26701625
MIRT487664	hsa-miR-6784-5p	PAR-CLIP	26701625
MIRT487658	hsa-miR-8085	PAR-CLIP	26701625
MIRT487662	hsa-miR-873-5p	PAR-CLIP	26701625
MIRT487669	hsa-miR-2278	PAR-CLIP	20371350
MIRT487668	hsa-miR-6165	PAR-CLIP	20371350
MIRT487667	hsa-miR-4747-3p	PAR-CLIP	20371350
MIRT487662	hsa-miR-873-5p	PAR-CLIP	20371350
MIRT487666	hsa-miR-1247-3p	PAR-CLIP	20371350
MIRT487665	hsa-miR-4532	PAR-CLIP	20371350
MIRT487664	hsa-miR-6784-5p	PAR-CLIP	20371350
MIRT487663	hsa-miR-6746-5p	PAR-CLIP	20371350
MIRT487662	hsa-miR-873-5p	PAR-CLIP	20371350
MIRT487661	hsa-miR-1538	PAR-CLIP	20371350
MIRT487660	hsa-miR-4745-3p	PAR-CLIP	20371350
MIRT487659	hsa-miR-6731-5p	PAR-CLIP	20371350
MIRT487658	hsa-miR-8085	PAR-CLIP	20371350
MIRT487657	hsa-miR-3976	PAR-CLIP	20371350
MIRT487669	hsa-miR-2278	PAR-CLIP	23592263
MIRT487668	hsa-miR-6165	PAR-CLIP	23592263
MIRT487667	hsa-miR-4747-3p	PAR-CLIP	23592263
MIRT487662	hsa-miR-873-5p	PAR-CLIP	23592263
MIRT487666	hsa-miR-1247-3p	PAR-CLIP	23592263
MIRT487665	hsa-miR-4532	PAR-CLIP	23592263
MIRT487664	hsa-miR-6784-5p	PAR-CLIP	23592263
MIRT487663	hsa-miR-6746-5p	PAR-CLIP	23592263
MIRT487662	hsa-miR-873-5p	PAR-CLIP	23592263
MIRT487661	hsa-miR-1538	PAR-CLIP	23592263
MIRT487660	hsa-miR-4745-3p	PAR-CLIP	23592263
MIRT487659	hsa-miR-6731-5p	PAR-CLIP	23592263
MIRT487658	hsa-miR-8085	PAR-CLIP	23592263
MIRT487657	hsa-miR-3976	PAR-CLIP	23592263
MIRT1053988	hsa-miR-553	CLIP-seq
MIRT1053989	hsa-miR-873	CLIP-seq
MIRT1053990	hsa-miR-1	CLIP-seq
MIRT1053991	hsa-miR-1254	CLIP-seq
MIRT1053992	hsa-miR-1266	CLIP-seq
MIRT1053993	hsa-miR-197	CLIP-seq
MIRT1053994	hsa-miR-206	CLIP-seq
MIRT1053995	hsa-miR-24	CLIP-seq
MIRT1053996	hsa-miR-2682	CLIP-seq
MIRT1053997	hsa-miR-3116	CLIP-seq
MIRT1053998	hsa-miR-3127-5p	CLIP-seq
MIRT1053999	hsa-miR-3165	CLIP-seq
MIRT1054000	hsa-miR-3166	CLIP-seq
MIRT1054001	hsa-miR-3177-3p	CLIP-seq
MIRT1054002	hsa-miR-3184	CLIP-seq
MIRT1054003	hsa-miR-339-5p	CLIP-seq
MIRT1054004	hsa-miR-3646	CLIP-seq
MIRT1054005	hsa-miR-3662	CLIP-seq
MIRT1054006	hsa-miR-3689a-3p	CLIP-seq
MIRT1054007	hsa-miR-3689c	CLIP-seq
MIRT1054008	hsa-miR-3689d	CLIP-seq
MIRT1054009	hsa-miR-3714	CLIP-seq
MIRT1054010	hsa-miR-3918	CLIP-seq
MIRT1054011	hsa-miR-3934	CLIP-seq
MIRT1054012	hsa-miR-423-5p	CLIP-seq
MIRT1054013	hsa-miR-4257	CLIP-seq
MIRT1054014	hsa-miR-4283	CLIP-seq
MIRT1054015	hsa-miR-4311	CLIP-seq
MIRT1054016	hsa-miR-4434	CLIP-seq
MIRT1054017	hsa-miR-449c	CLIP-seq
MIRT1054018	hsa-miR-4514	CLIP-seq
MIRT1054019	hsa-miR-4516	CLIP-seq
MIRT1054020	hsa-miR-4518	CLIP-seq
MIRT1054021	hsa-miR-4531	CLIP-seq
MIRT1054022	hsa-miR-4537	CLIP-seq
MIRT1054023	hsa-miR-4643	CLIP-seq
MIRT1054024	hsa-miR-4681	CLIP-seq
MIRT1054025	hsa-miR-4692	CLIP-seq
MIRT1054026	hsa-miR-4706	CLIP-seq
MIRT1054027	hsa-miR-4728-5p	CLIP-seq
MIRT1054028	hsa-miR-4729	CLIP-seq
MIRT1054029	hsa-miR-4749-5p	CLIP-seq
MIRT1054030	hsa-miR-486-3p	CLIP-seq
MIRT1054031	hsa-miR-548an	CLIP-seq
MIRT1054032	hsa-miR-550a	CLIP-seq
MIRT1054033	hsa-miR-586	CLIP-seq
MIRT1054034	hsa-miR-613	CLIP-seq
MIRT1054035	hsa-miR-661	CLIP-seq
MIRT1054036	hsa-miR-744	CLIP-seq
MIRT1053989	hsa-miR-873	CLIP-seq
MIRT1054037	hsa-miR-887	CLIP-seq
MIRT1053991	hsa-miR-1254	CLIP-seq
MIRT1053997	hsa-miR-3116	CLIP-seq
MIRT1054001	hsa-miR-3177-3p	CLIP-seq
MIRT1054002	hsa-miR-3184	CLIP-seq
MIRT1054003	hsa-miR-339-5p	CLIP-seq
MIRT2012249	hsa-miR-3912	CLIP-seq
MIRT1054012	hsa-miR-423-5p	CLIP-seq
MIRT1054014	hsa-miR-4283	CLIP-seq
MIRT2012250	hsa-miR-4722-3p	CLIP-seq
MIRT1054027	hsa-miR-4728-5p	CLIP-seq
MIRT2012251	hsa-miR-4731-3p	CLIP-seq
MIRT2012252	hsa-miR-4801	CLIP-seq
MIRT1054035	hsa-miR-661	CLIP-seq
MIRT1053990	hsa-miR-1	CLIP-seq
MIRT2244636	hsa-miR-105	CLIP-seq
MIRT1053991	hsa-miR-1254	CLIP-seq
MIRT1053992	hsa-miR-1266	CLIP-seq
MIRT1053993	hsa-miR-197	CLIP-seq
MIRT1053994	hsa-miR-206	CLIP-seq
MIRT1053995	hsa-miR-24	CLIP-seq
MIRT1053996	hsa-miR-2682	CLIP-seq
MIRT1053997	hsa-miR-3116	CLIP-seq
MIRT1053998	hsa-miR-3127-5p	CLIP-seq
MIRT1054000	hsa-miR-3166	CLIP-seq
MIRT1054002	hsa-miR-3184	CLIP-seq
MIRT1054009	hsa-miR-3714	CLIP-seq
MIRT1054010	hsa-miR-3918	CLIP-seq
MIRT2244637	hsa-miR-421	CLIP-seq
MIRT1054012	hsa-miR-423-5p	CLIP-seq
MIRT1054013	hsa-miR-4257	CLIP-seq
MIRT2244638	hsa-miR-4270	CLIP-seq
MIRT1054015	hsa-miR-4311	CLIP-seq
MIRT2244639	hsa-miR-4441	CLIP-seq
MIRT1054017	hsa-miR-449c	CLIP-seq
MIRT1054018	hsa-miR-4514	CLIP-seq
MIRT1054020	hsa-miR-4518	CLIP-seq
MIRT1054025	hsa-miR-4692	CLIP-seq
MIRT2244640	hsa-miR-4709-5p	CLIP-seq
MIRT2244641	hsa-miR-4719	CLIP-seq
MIRT2012250	hsa-miR-4722-3p	CLIP-seq
MIRT2012251	hsa-miR-4731-3p	CLIP-seq
MIRT2012252	hsa-miR-4801	CLIP-seq
MIRT1054031	hsa-miR-548an	CLIP-seq
MIRT1054033	hsa-miR-586	CLIP-seq
MIRT1054034	hsa-miR-613	CLIP-seq
MIRT1054035	hsa-miR-661	CLIP-seq
MIRT1054000	hsa-miR-3166	CLIP-seq
MIRT1054015	hsa-miR-4311	CLIP-seq
MIRT1054018	hsa-miR-4514	CLIP-seq
MIRT1054023	hsa-miR-4643	CLIP-seq
MIRT1054025	hsa-miR-4692	CLIP-seq
MIRT1054033	hsa-miR-586	CLIP-seq
MIRT1053993	hsa-miR-197	CLIP-seq
MIRT2429704	hsa-miR-412	CLIP-seq
MIRT2429705	hsa-miR-4436b-5p	CLIP-seq
MIRT2012251	hsa-miR-4731-3p	CLIP-seq
MIRT2012252	hsa-miR-4801	CLIP-seq
MIRT1054033	hsa-miR-586	CLIP-seq
MIRT1053993	hsa-miR-197	CLIP-seq
MIRT2429704	hsa-miR-412	CLIP-seq
MIRT2429705	hsa-miR-4436b-5p	CLIP-seq
MIRT2012251	hsa-miR-4731-3p	CLIP-seq
MIRT2012252	hsa-miR-4801	CLIP-seq

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GO ID	Ontology	Definition	Evidence	Reference
GO:0005509	Function	Calcium ion binding	IBA
GO:0005509	Function	Calcium ion binding	IEA
GO:0005509	Function	Calcium ion binding	TAS	8038222
GO:0005515	Function	Protein binding	IPI	16189514, 16713569, 25416956, 25519916, 28514442, 32296183, 32814053, 33961781
GO:0009966	Process	Regulation of signal transduction	IBA
GO:0016020	Component	Membrane	IEA
GO:0046872	Function	Metal ion binding	IEA

MIM	HGNC	e!Ensembl
600207	5145	ENSG00000115756

Protein

UniProt ID

P37235

Protein name

Hippocalcin-like protein 1 (Calcium-binding protein BDR-1) (HLP2) (Visinin-like protein 3) (VILIP-3)

Protein function

May be involved in the calcium-dependent regulation of rhodopsin phosphorylation.

PDB

5T7C

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF13833	EF-hand_8	39 → 90	EF-hand domain pair	Domain
PF13499	EF-hand_7	98 → 174	EF-hand domain pair	Domain
PF00036	EF-hand_1	148 → 176	EF hand	Domain

Sequence

MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
RLLQCDPSSASQF

Sequence length

193

Interactions

View interactions

HPCAL1 (hippocalcin like 1)