Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein
Entrez ID	3219
Gene name	Homeobox B9
Gene symbol	HOXB9
Synonyms (NCBI Gene)	HOX-2.5HOX2HOX2E
Chromosome	17
Chromosome location	17q21.32
Summary	This gene is a member of the Abd-B homeobox family and encodes a protein with a homeobox DNA-binding domain. It is included in a cluster of homeobox B genes located on chromosome 17. The encoded nuclear protein functions as a sequence-specific transcripti

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miRTarBase ID	miRNA	Experiments	Reference
MIRT024768	hsa-miR-215-5p	Microarray	19074876
MIRT026516	hsa-miR-192-5p	Microarray	19074876
MIRT1053410	hsa-miR-122	CLIP-seq
MIRT1053411	hsa-miR-1249	CLIP-seq
MIRT1053412	hsa-miR-1262	CLIP-seq
MIRT1053413	hsa-miR-1273g	CLIP-seq
MIRT1053414	hsa-miR-1324	CLIP-seq
MIRT1053415	hsa-miR-139-5p	CLIP-seq
MIRT1053416	hsa-miR-147	CLIP-seq
MIRT1053417	hsa-miR-1909	CLIP-seq
MIRT1053418	hsa-miR-192	CLIP-seq
MIRT1053419	hsa-miR-2116	CLIP-seq
MIRT1053420	hsa-miR-215	CLIP-seq
MIRT1053421	hsa-miR-3119	CLIP-seq
MIRT1053422	hsa-miR-3136-5p	CLIP-seq
MIRT1053423	hsa-miR-3160-3p	CLIP-seq
MIRT1053424	hsa-miR-3164	CLIP-seq
MIRT1053425	hsa-miR-3170	CLIP-seq
MIRT1053426	hsa-miR-3184	CLIP-seq
MIRT1053427	hsa-miR-3198	CLIP-seq
MIRT1053428	hsa-miR-320e	CLIP-seq
MIRT1053429	hsa-miR-323-5p	CLIP-seq
MIRT1053430	hsa-miR-323b-5p	CLIP-seq
MIRT1053431	hsa-miR-346	CLIP-seq
MIRT1053432	hsa-miR-3618	CLIP-seq
MIRT1053433	hsa-miR-3657	CLIP-seq
MIRT1053434	hsa-miR-3670	CLIP-seq
MIRT1053435	hsa-miR-3691-5p	CLIP-seq
MIRT1053436	hsa-miR-3911	CLIP-seq
MIRT1053437	hsa-miR-3928	CLIP-seq
MIRT1053438	hsa-miR-423-5p	CLIP-seq
MIRT1053439	hsa-miR-4273	CLIP-seq
MIRT1053440	hsa-miR-4288	CLIP-seq
MIRT1053441	hsa-miR-4290	CLIP-seq
MIRT1053442	hsa-miR-4292	CLIP-seq
MIRT1053443	hsa-miR-4308	CLIP-seq
MIRT1053444	hsa-miR-4309	CLIP-seq
MIRT1053445	hsa-miR-4318	CLIP-seq
MIRT1053446	hsa-miR-4421	CLIP-seq
MIRT1053447	hsa-miR-4433	CLIP-seq
MIRT1053448	hsa-miR-4434	CLIP-seq
MIRT1053449	hsa-miR-4439	CLIP-seq
MIRT1053450	hsa-miR-4459	CLIP-seq
MIRT1053451	hsa-miR-4487	CLIP-seq
MIRT1053452	hsa-miR-4489	CLIP-seq
MIRT1053453	hsa-miR-4513	CLIP-seq
MIRT1053454	hsa-miR-4516	CLIP-seq
MIRT1053455	hsa-miR-451b	CLIP-seq
MIRT1053456	hsa-miR-4659a-3p	CLIP-seq
MIRT1053457	hsa-miR-4659b-3p	CLIP-seq
MIRT1053458	hsa-miR-4663	CLIP-seq
MIRT1053459	hsa-miR-4677-5p	CLIP-seq
MIRT1053460	hsa-miR-4693-5p	CLIP-seq
MIRT1053461	hsa-miR-4701-3p	CLIP-seq
MIRT1053462	hsa-miR-4716-3p	CLIP-seq
MIRT1053463	hsa-miR-4722-5p	CLIP-seq
MIRT1053464	hsa-miR-4723-5p	CLIP-seq
MIRT1053465	hsa-miR-4742-5p	CLIP-seq
MIRT1053466	hsa-miR-4747-3p	CLIP-seq
MIRT1053467	hsa-miR-4749-3p	CLIP-seq
MIRT1053468	hsa-miR-4752	CLIP-seq
MIRT1053469	hsa-miR-4764-5p	CLIP-seq
MIRT1053470	hsa-miR-4768-3p	CLIP-seq
MIRT1053471	hsa-miR-4772-5p	CLIP-seq
MIRT1053472	hsa-miR-4790-3p	CLIP-seq
MIRT1053473	hsa-miR-495	CLIP-seq
MIRT1053474	hsa-miR-558	CLIP-seq
MIRT1053475	hsa-miR-563	CLIP-seq
MIRT1053476	hsa-miR-571	CLIP-seq
MIRT1053477	hsa-miR-632	CLIP-seq
MIRT1053478	hsa-miR-644	CLIP-seq
MIRT1053479	hsa-miR-645	CLIP-seq
MIRT1053480	hsa-miR-654-3p	CLIP-seq
MIRT1053481	hsa-miR-876-3p	CLIP-seq
MIRT1053482	hsa-miR-885-5p	CLIP-seq
MIRT1053483	hsa-miR-892a	CLIP-seq
MIRT1053484	hsa-miR-892b	CLIP-seq
MIRT1053485	hsa-miR-934	CLIP-seq
MIRT1053486	hsa-miR-939	CLIP-seq
MIRT1053487	hsa-miR-943	CLIP-seq
MIRT2012158	hsa-miR-4799-5p	CLIP-seq
MIRT2012159	hsa-miR-577	CLIP-seq
MIRT2244467	hsa-miR-1253	CLIP-seq
MIRT2244468	hsa-miR-1323	CLIP-seq
MIRT2244469	hsa-miR-28-5p	CLIP-seq
MIRT2244470	hsa-miR-3065-5p	CLIP-seq
MIRT2244471	hsa-miR-3139	CLIP-seq
MIRT2244472	hsa-miR-3945	CLIP-seq
MIRT2244473	hsa-miR-4761-3p	CLIP-seq
MIRT2012158	hsa-miR-4799-5p	CLIP-seq
MIRT2244474	hsa-miR-548o	CLIP-seq
MIRT2244475	hsa-miR-708	CLIP-seq
MIRT2244467	hsa-miR-1253	CLIP-seq
MIRT2389130	hsa-miR-3173-3p	CLIP-seq
MIRT2389131	hsa-miR-4779	CLIP-seq

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GO ID	Ontology	Definition	Evidence	Reference
GO:0000785	Component	Chromatin	ISA
GO:0000977	Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	ISA
GO:0003677	Function	DNA binding	IEA
GO:0003700	Function	DNA-binding transcription factor activity	IBA
GO:0005515	Function	Protein binding	IPI	10617598, 16189514, 19060904, 21516116, 25416956, 32296183
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	IEA
GO:0006351	Process	DNA-templated transcription	IEA
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0009952	Process	Anterior/posterior pattern specification	IBA
GO:0009952	Process	Anterior/posterior pattern specification	IEA
GO:0009954	Process	Proximal/distal pattern formation	IBA
GO:0030879	Process	Mammary gland development	IEA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0048704	Process	Embryonic skeletal system morphogenesis	IBA
GO:0048706	Process	Embryonic skeletal system development	IEA
GO:0060326	Process	Cell chemotaxis	IDA	19576624
GO:0090575	Component	RNA polymerase II transcription regulator complex	IEA
GO:1990837	Function	Sequence-specific double-stranded DNA binding	IDA	28473536
GO:1990837	Function	Sequence-specific double-stranded DNA binding	IEA

MIM	HGNC	e!Ensembl
142964	5120	ENSG00000170689

P17482

Protein name

Homeobox protein Hox-B9 (Homeobox protein Hox-2.5) (Homeobox protein Hox-2E)

Protein function

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF04617	Hox9_act	1 → 172		Family
PF00046	Homeodomain	186 → 242	Homeodomain	Domain

Sequence

MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG
ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP
LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL
HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM
KKMNKEQGKE

Sequence length

250

Interactions

View interactions

HOXB9 (homeobox B9)