FOXA1 (forkhead box A1)

Gene

• Entrez ID: 3169
• Gene name: Forkhead box A1
• Gene symbol: FOXA1
• Synonyms (NCBI Gene): HNF3A, TCF3A
• Chromosome: 14
• Chromosome location: 14q21.1
• Summary: This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar fami

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT002078	hsa-let-7a-5p	Luciferase reporter assay	17890240
MIRT002078	hsa-let-7a-5p	Luciferase reporter assay	17890240
MIRT002078	hsa-let-7a-5p	Luciferase reporter assay	17890240
MIRT002078	hsa-let-7a-5p	Luciferase reporter assay	17890240
MIRT024644	hsa-miR-215-5p	Microarray	19074876
MIRT026509	hsa-miR-192-5p	Microarray	19074876
MIRT548195	hsa-miR-30e-5p	PAR-CLIP	21572407
MIRT548194	hsa-miR-30a-5p	PAR-CLIP	21572407
MIRT548193	hsa-miR-30b-5p	PAR-CLIP	21572407
MIRT548192	hsa-miR-30c-5p	PAR-CLIP	21572407
MIRT548191	hsa-miR-30d-5p	PAR-CLIP	21572407
MIRT548190	hsa-miR-218-2-3p	PAR-CLIP	21572407
MIRT548189	hsa-miR-758-5p	PAR-CLIP	21572407
MIRT548187	hsa-miR-496	PAR-CLIP	21572407
MIRT548186	hsa-miR-584-5p	PAR-CLIP	21572407
MIRT548185	hsa-miR-3064-3p	PAR-CLIP	21572407
MIRT548184	hsa-miR-4715-3p	PAR-CLIP	21572407
MIRT548195	hsa-miR-30e-5p	PAR-CLIP	21572407
MIRT548194	hsa-miR-30a-5p	PAR-CLIP	21572407
MIRT548193	hsa-miR-30b-5p	PAR-CLIP	21572407
MIRT548192	hsa-miR-30c-5p	PAR-CLIP	21572407
MIRT548191	hsa-miR-30d-5p	PAR-CLIP	21572407
MIRT548190	hsa-miR-218-2-3p	PAR-CLIP	21572407
MIRT548189	hsa-miR-758-5p	PAR-CLIP	21572407
MIRT548188	hsa-miR-3607-3p	PAR-CLIP	21572407
MIRT548187	hsa-miR-496	PAR-CLIP	21572407
MIRT548186	hsa-miR-584-5p	PAR-CLIP	21572407
MIRT548185	hsa-miR-3064-3p	PAR-CLIP	21572407
MIRT548184	hsa-miR-4715-3p	PAR-CLIP	21572407
MIRT548190	hsa-miR-218-2-3p	PAR-CLIP	27292025
MIRT548190	hsa-miR-218-2-3p	PAR-CLIP	27292025
MIRT548185	hsa-miR-3064-3p	PAR-CLIP	27292025
MIRT548185	hsa-miR-3064-3p	PAR-CLIP	27292025
MIRT548194	hsa-miR-30a-5p	PAR-CLIP	27292025
MIRT548194	hsa-miR-30a-5p	PAR-CLIP	27292025
MIRT548193	hsa-miR-30b-5p	PAR-CLIP	27292025
MIRT548193	hsa-miR-30b-5p	PAR-CLIP	27292025
MIRT548192	hsa-miR-30c-5p	PAR-CLIP	27292025
MIRT548192	hsa-miR-30c-5p	PAR-CLIP	27292025
MIRT548191	hsa-miR-30d-5p	PAR-CLIP	27292025
MIRT548191	hsa-miR-30d-5p	PAR-CLIP	27292025
MIRT548195	hsa-miR-30e-5p	PAR-CLIP	27292025
MIRT548195	hsa-miR-30e-5p	PAR-CLIP	27292025
MIRT548188	hsa-miR-3607-3p	PAR-CLIP	27292025
MIRT548184	hsa-miR-4715-3p	PAR-CLIP	27292025
MIRT548184	hsa-miR-4715-3p	PAR-CLIP	27292025
MIRT548187	hsa-miR-496	PAR-CLIP	27292025
MIRT548187	hsa-miR-496	PAR-CLIP	27292025
MIRT548186	hsa-miR-584-5p	PAR-CLIP	27292025
MIRT548186	hsa-miR-584-5p	PAR-CLIP	27292025
MIRT548189	hsa-miR-758-5p	PAR-CLIP	27292025
MIRT548189	hsa-miR-758-5p	PAR-CLIP	27292025
MIRT737378	hsa-miR-100-5p	Luciferase reporter assay, Western blotting	32201519
MIRT737379	hsa-miR-125b-5p	Luciferase reporter assay, Western blotting, Microarray, qRT-PCR	32201519
MIRT548195	hsa-miR-30e-5p	PAR-CLIP	21572407
MIRT548194	hsa-miR-30a-5p	PAR-CLIP	21572407
MIRT548193	hsa-miR-30b-5p	PAR-CLIP	21572407
MIRT548192	hsa-miR-30c-5p	PAR-CLIP	21572407
MIRT548191	hsa-miR-30d-5p	PAR-CLIP	21572407
MIRT548190	hsa-miR-218-2-3p	PAR-CLIP	21572407
MIRT548189	hsa-miR-758-5p	PAR-CLIP	21572407
MIRT548187	hsa-miR-496	PAR-CLIP	21572407
MIRT548186	hsa-miR-584-5p	PAR-CLIP	21572407
MIRT548185	hsa-miR-3064-3p	PAR-CLIP	21572407
MIRT548184	hsa-miR-4715-3p	PAR-CLIP	21572407
MIRT548195	hsa-miR-30e-5p	PAR-CLIP	21572407
MIRT548194	hsa-miR-30a-5p	PAR-CLIP	21572407
MIRT548193	hsa-miR-30b-5p	PAR-CLIP	21572407
MIRT548192	hsa-miR-30c-5p	PAR-CLIP	21572407
MIRT548191	hsa-miR-30d-5p	PAR-CLIP	21572407
MIRT548190	hsa-miR-218-2-3p	PAR-CLIP	21572407
MIRT548189	hsa-miR-758-5p	PAR-CLIP	21572407
MIRT548188	hsa-miR-3607-3p	PAR-CLIP	21572407
MIRT548187	hsa-miR-496	PAR-CLIP	21572407
MIRT548186	hsa-miR-584-5p	PAR-CLIP	21572407
MIRT548185	hsa-miR-3064-3p	PAR-CLIP	21572407
MIRT548184	hsa-miR-4715-3p	PAR-CLIP	21572407
MIRT1001323	hsa-miR-106a	CLIP-seq
MIRT1001324	hsa-miR-106b	CLIP-seq
MIRT1001325	hsa-miR-1207-3p	CLIP-seq
MIRT1001326	hsa-miR-1231	CLIP-seq
MIRT1001327	hsa-miR-1243	CLIP-seq
MIRT1001328	hsa-miR-1255a	CLIP-seq
MIRT1001329	hsa-miR-1255b	CLIP-seq
MIRT1001330	hsa-miR-1267	CLIP-seq
MIRT1001331	hsa-miR-1275	CLIP-seq
MIRT1001332	hsa-miR-129-5p	CLIP-seq
MIRT1001333	hsa-miR-132	CLIP-seq
MIRT1001334	hsa-miR-141	CLIP-seq
MIRT1001335	hsa-miR-142-5p	CLIP-seq
MIRT1001336	hsa-miR-149	CLIP-seq
MIRT1001337	hsa-miR-17	CLIP-seq
MIRT1001338	hsa-miR-186	CLIP-seq
MIRT1001339	hsa-miR-1915	CLIP-seq
MIRT1001340	hsa-miR-194	CLIP-seq
MIRT1001341	hsa-miR-200a	CLIP-seq
MIRT1001342	hsa-miR-203	CLIP-seq
MIRT1001343	hsa-miR-204	CLIP-seq
MIRT1001344	hsa-miR-2052	CLIP-seq
MIRT1001345	hsa-miR-2054	CLIP-seq
MIRT1001346	hsa-miR-20a	CLIP-seq
MIRT1001347	hsa-miR-20b	CLIP-seq
MIRT1001348	hsa-miR-211	CLIP-seq
MIRT1001349	hsa-miR-212	CLIP-seq
MIRT1001350	hsa-miR-2276	CLIP-seq
MIRT1001351	hsa-miR-23a	CLIP-seq
MIRT1001352	hsa-miR-23b	CLIP-seq
MIRT1001353	hsa-miR-23c	CLIP-seq
MIRT1001354	hsa-miR-2681	CLIP-seq
MIRT1001355	hsa-miR-3064-5p	CLIP-seq
MIRT1001356	hsa-miR-3074-3p	CLIP-seq
MIRT1001357	hsa-miR-30a	CLIP-seq
MIRT1001358	hsa-miR-30b	CLIP-seq
MIRT1001359	hsa-miR-30c	CLIP-seq
MIRT1001360	hsa-miR-30d	CLIP-seq
MIRT1001361	hsa-miR-30e	CLIP-seq
MIRT1001362	hsa-miR-3132	CLIP-seq
MIRT1001363	hsa-miR-3133	CLIP-seq
MIRT1001364	hsa-miR-3147	CLIP-seq
MIRT1001365	hsa-miR-3150b-3p	CLIP-seq
MIRT1001366	hsa-miR-3153	CLIP-seq
MIRT1001367	hsa-miR-3159	CLIP-seq
MIRT1001368	hsa-miR-3161	CLIP-seq
MIRT1001369	hsa-miR-3170	CLIP-seq
MIRT1001370	hsa-miR-3190	CLIP-seq
MIRT1001371	hsa-miR-323b-5p	CLIP-seq
MIRT1001372	hsa-miR-330-3p	CLIP-seq
MIRT1001373	hsa-miR-338-3p	CLIP-seq
MIRT1001374	hsa-miR-338-5p	CLIP-seq
MIRT1001375	hsa-miR-3591-3p	CLIP-seq
MIRT1001376	hsa-miR-361-3p	CLIP-seq
MIRT1001377	hsa-miR-3616-3p	CLIP-seq
MIRT1001378	hsa-miR-3619-3p	CLIP-seq
MIRT1001379	hsa-miR-3646	CLIP-seq
MIRT1001380	hsa-miR-3658	CLIP-seq
MIRT1001381	hsa-miR-3662	CLIP-seq
MIRT1001382	hsa-miR-3674	CLIP-seq
MIRT1001383	hsa-miR-3691-5p	CLIP-seq
MIRT1001384	hsa-miR-374a	CLIP-seq
MIRT1001385	hsa-miR-374b	CLIP-seq
MIRT1001386	hsa-miR-3918	CLIP-seq
MIRT1001387	hsa-miR-3936	CLIP-seq
MIRT1001388	hsa-miR-3938	CLIP-seq
MIRT1001389	hsa-miR-3978	CLIP-seq
MIRT1001390	hsa-miR-410	CLIP-seq
MIRT1001391	hsa-miR-4260	CLIP-seq
MIRT1001392	hsa-miR-4267	CLIP-seq
MIRT1001393	hsa-miR-431	CLIP-seq
MIRT1001394	hsa-miR-4311	CLIP-seq
MIRT1001395	hsa-miR-4318	CLIP-seq
MIRT1001396	hsa-miR-4325	CLIP-seq
MIRT1001397	hsa-miR-4422	CLIP-seq
MIRT1001398	hsa-miR-4425	CLIP-seq
MIRT1001399	hsa-miR-4451	CLIP-seq
MIRT1001400	hsa-miR-4476	CLIP-seq
MIRT1001401	hsa-miR-450b-3p	CLIP-seq
MIRT1001402	hsa-miR-450b-5p	CLIP-seq
MIRT1001403	hsa-miR-451b	CLIP-seq
MIRT1001404	hsa-miR-4525	CLIP-seq
MIRT1001405	hsa-miR-4529-5p	CLIP-seq
MIRT1001406	hsa-miR-4533	CLIP-seq
MIRT1001407	hsa-miR-4535	CLIP-seq
MIRT1001408	hsa-miR-4637	CLIP-seq
MIRT1001409	hsa-miR-4665-5p	CLIP-seq
MIRT1001410	hsa-miR-4666-3p	CLIP-seq
MIRT1001411	hsa-miR-4685-5p	CLIP-seq
MIRT1001412	hsa-miR-4694-3p	CLIP-seq
MIRT1001413	hsa-miR-4701-5p	CLIP-seq
MIRT1001414	hsa-miR-4705	CLIP-seq
MIRT1001415	hsa-miR-4721	CLIP-seq
MIRT1001416	hsa-miR-4723-5p	CLIP-seq
MIRT1001417	hsa-miR-4724-5p	CLIP-seq
MIRT1001418	hsa-miR-4726-3p	CLIP-seq
MIRT1001419	hsa-miR-4729	CLIP-seq
MIRT1001420	hsa-miR-4731-3p	CLIP-seq
MIRT1001421	hsa-miR-4752	CLIP-seq
MIRT1001422	hsa-miR-4755-5p	CLIP-seq
MIRT1001423	hsa-miR-4768-5p	CLIP-seq
MIRT1001424	hsa-miR-4772-3p	CLIP-seq
MIRT1001425	hsa-miR-4775	CLIP-seq
MIRT1001426	hsa-miR-4776-5p	CLIP-seq
MIRT1001427	hsa-miR-4777-3p	CLIP-seq
MIRT1001428	hsa-miR-4784	CLIP-seq
MIRT1001429	hsa-miR-4789-5p	CLIP-seq
MIRT1001430	hsa-miR-4794	CLIP-seq
MIRT1001431	hsa-miR-4801	CLIP-seq
MIRT1001432	hsa-miR-494	CLIP-seq
MIRT1001433	hsa-miR-507	CLIP-seq
MIRT1001434	hsa-miR-511	CLIP-seq
MIRT1001435	hsa-miR-516b	CLIP-seq
MIRT1001436	hsa-miR-518a-5p	CLIP-seq
MIRT1001437	hsa-miR-519a	CLIP-seq
MIRT1001438	hsa-miR-519b-3p	CLIP-seq
MIRT1001439	hsa-miR-519c-3p	CLIP-seq
MIRT1001440	hsa-miR-519d	CLIP-seq
MIRT1001441	hsa-miR-520d-5p	CLIP-seq
MIRT1001442	hsa-miR-522	CLIP-seq
MIRT1001443	hsa-miR-524-5p	CLIP-seq
MIRT1001444	hsa-miR-526b	CLIP-seq
MIRT1001445	hsa-miR-527	CLIP-seq
MIRT1001446	hsa-miR-539	CLIP-seq
MIRT1001447	hsa-miR-548a-5p	CLIP-seq
MIRT1001448	hsa-miR-548ab	CLIP-seq
MIRT1001449	hsa-miR-548ak	CLIP-seq
MIRT1001450	hsa-miR-548b-5p	CLIP-seq
MIRT1001451	hsa-miR-548c-3p	CLIP-seq
MIRT1001452	hsa-miR-548c-5p	CLIP-seq
MIRT1001453	hsa-miR-548d-5p	CLIP-seq
MIRT1001454	hsa-miR-548h	CLIP-seq
MIRT1001455	hsa-miR-548i	CLIP-seq
MIRT1001456	hsa-miR-548j	CLIP-seq
MIRT1001457	hsa-miR-548k	CLIP-seq
MIRT1001458	hsa-miR-548l	CLIP-seq
MIRT1001459	hsa-miR-548w	CLIP-seq
MIRT1001460	hsa-miR-548y	CLIP-seq
MIRT1001461	hsa-miR-556-3p	CLIP-seq
MIRT1001462	hsa-miR-557	CLIP-seq
MIRT1001463	hsa-miR-559	CLIP-seq
MIRT1001464	hsa-miR-580	CLIP-seq
MIRT1001465	hsa-miR-583	CLIP-seq
MIRT1001466	hsa-miR-584	CLIP-seq
MIRT1001467	hsa-miR-588	CLIP-seq
MIRT1001468	hsa-miR-590-3p	CLIP-seq
MIRT1001469	hsa-miR-591	CLIP-seq
MIRT1001470	hsa-miR-615-5p	CLIP-seq
MIRT1001471	hsa-miR-623	CLIP-seq
MIRT1001472	hsa-miR-625	CLIP-seq
MIRT1001473	hsa-miR-634	CLIP-seq
MIRT1001474	hsa-miR-637	CLIP-seq
MIRT1001475	hsa-miR-654-3p	CLIP-seq
MIRT1001476	hsa-miR-765	CLIP-seq
MIRT1001477	hsa-miR-769-3p	CLIP-seq
MIRT1001478	hsa-miR-802	CLIP-seq
MIRT1001479	hsa-miR-93	CLIP-seq
MIRT1001323	hsa-miR-106a	CLIP-seq
MIRT1001324	hsa-miR-106b	CLIP-seq
MIRT1001327	hsa-miR-1243	CLIP-seq
MIRT1001328	hsa-miR-1255a	CLIP-seq
MIRT1001329	hsa-miR-1255b	CLIP-seq
MIRT1001330	hsa-miR-1267	CLIP-seq
MIRT1996751	hsa-miR-1273g	CLIP-seq
MIRT1001331	hsa-miR-1275	CLIP-seq
MIRT1001332	hsa-miR-129-5p	CLIP-seq
MIRT1001333	hsa-miR-132	CLIP-seq
MIRT1001334	hsa-miR-141	CLIP-seq
MIRT1001335	hsa-miR-142-5p	CLIP-seq
MIRT1996752	hsa-miR-147	CLIP-seq
MIRT1001337	hsa-miR-17	CLIP-seq
MIRT1996753	hsa-miR-183	CLIP-seq
MIRT1001338	hsa-miR-186	CLIP-seq
MIRT1001339	hsa-miR-1915	CLIP-seq
MIRT1001340	hsa-miR-194	CLIP-seq
MIRT1001341	hsa-miR-200a	CLIP-seq
MIRT1001345	hsa-miR-2054	CLIP-seq
MIRT1001346	hsa-miR-20a	CLIP-seq
MIRT1001347	hsa-miR-20b	CLIP-seq
MIRT1001349	hsa-miR-212	CLIP-seq
MIRT1001350	hsa-miR-2276	CLIP-seq
MIRT1001351	hsa-miR-23a	CLIP-seq
MIRT1001352	hsa-miR-23b	CLIP-seq
MIRT1001353	hsa-miR-23c	CLIP-seq
MIRT1001354	hsa-miR-2681	CLIP-seq
MIRT1001356	hsa-miR-3074-3p	CLIP-seq
MIRT1001357	hsa-miR-30a	CLIP-seq
MIRT1001358	hsa-miR-30b	CLIP-seq
MIRT1001359	hsa-miR-30c	CLIP-seq
MIRT1001360	hsa-miR-30d	CLIP-seq
MIRT1001361	hsa-miR-30e	CLIP-seq
MIRT1001362	hsa-miR-3132	CLIP-seq
MIRT1001365	hsa-miR-3150b-3p	CLIP-seq
MIRT1001366	hsa-miR-3153	CLIP-seq
MIRT1001367	hsa-miR-3159	CLIP-seq
MIRT1001368	hsa-miR-3161	CLIP-seq
MIRT1001369	hsa-miR-3170	CLIP-seq
MIRT1001370	hsa-miR-3190	CLIP-seq
MIRT1001371	hsa-miR-323b-5p	CLIP-seq
MIRT1001372	hsa-miR-330-3p	CLIP-seq
MIRT1001374	hsa-miR-338-5p	CLIP-seq
MIRT1001375	hsa-miR-3591-3p	CLIP-seq
MIRT1001378	hsa-miR-3619-3p	CLIP-seq
MIRT1001380	hsa-miR-3658	CLIP-seq
MIRT1001381	hsa-miR-3662	CLIP-seq
MIRT1001382	hsa-miR-3674	CLIP-seq
MIRT1001383	hsa-miR-3691-5p	CLIP-seq
MIRT1996754	hsa-miR-380	CLIP-seq
MIRT1996755	hsa-miR-3911	CLIP-seq
MIRT1996756	hsa-miR-3915	CLIP-seq
MIRT1001386	hsa-miR-3918	CLIP-seq
MIRT1996757	hsa-miR-3924	CLIP-seq
MIRT1996758	hsa-miR-3928	CLIP-seq
MIRT1001387	hsa-miR-3936	CLIP-seq
MIRT1001389	hsa-miR-3978	CLIP-seq
MIRT1001390	hsa-miR-410	CLIP-seq
MIRT1001391	hsa-miR-4260	CLIP-seq
MIRT1996759	hsa-miR-4280	CLIP-seq
MIRT1001393	hsa-miR-431	CLIP-seq
MIRT1001394	hsa-miR-4311	CLIP-seq
MIRT1001395	hsa-miR-4318	CLIP-seq
MIRT1996760	hsa-miR-432	CLIP-seq
MIRT1001396	hsa-miR-4325	CLIP-seq
MIRT1001399	hsa-miR-4451	CLIP-seq
MIRT1001400	hsa-miR-4476	CLIP-seq
MIRT1996761	hsa-miR-4495	CLIP-seq
MIRT1001401	hsa-miR-450b-3p	CLIP-seq
MIRT1001402	hsa-miR-450b-5p	CLIP-seq
MIRT1001403	hsa-miR-451b	CLIP-seq
MIRT1001404	hsa-miR-4525	CLIP-seq
MIRT1001405	hsa-miR-4529-5p	CLIP-seq
MIRT1001406	hsa-miR-4533	CLIP-seq
MIRT1001407	hsa-miR-4535	CLIP-seq
MIRT1001409	hsa-miR-4665-5p	CLIP-seq
MIRT1001410	hsa-miR-4666-3p	CLIP-seq
MIRT1001411	hsa-miR-4685-5p	CLIP-seq
MIRT1001413	hsa-miR-4701-5p	CLIP-seq
MIRT1001414	hsa-miR-4705	CLIP-seq
MIRT1001416	hsa-miR-4723-5p	CLIP-seq
MIRT1001418	hsa-miR-4726-3p	CLIP-seq
MIRT1996762	hsa-miR-4728-3p	CLIP-seq
MIRT1001420	hsa-miR-4731-3p	CLIP-seq
MIRT1001421	hsa-miR-4752	CLIP-seq
MIRT1001424	hsa-miR-4772-3p	CLIP-seq
MIRT1001425	hsa-miR-4775	CLIP-seq
MIRT1001426	hsa-miR-4776-5p	CLIP-seq
MIRT1001427	hsa-miR-4777-3p	CLIP-seq
MIRT1001428	hsa-miR-4784	CLIP-seq
MIRT1001429	hsa-miR-4789-5p	CLIP-seq
MIRT1996763	hsa-miR-4795-3p	CLIP-seq
MIRT1001431	hsa-miR-4801	CLIP-seq
MIRT1001432	hsa-miR-494	CLIP-seq
MIRT1001433	hsa-miR-507	CLIP-seq
MIRT1001434	hsa-miR-511	CLIP-seq
MIRT1001436	hsa-miR-518a-5p	CLIP-seq
MIRT1001437	hsa-miR-519a	CLIP-seq
MIRT1001438	hsa-miR-519b-3p	CLIP-seq
MIRT1001439	hsa-miR-519c-3p	CLIP-seq
MIRT1001440	hsa-miR-519d	CLIP-seq
MIRT1001441	hsa-miR-520d-5p	CLIP-seq
MIRT1001443	hsa-miR-524-5p	CLIP-seq
MIRT1001444	hsa-miR-526b	CLIP-seq
MIRT1001445	hsa-miR-527	CLIP-seq
MIRT1001447	hsa-miR-548a-5p	CLIP-seq
MIRT1001448	hsa-miR-548ab	CLIP-seq
MIRT1001449	hsa-miR-548ak	CLIP-seq
MIRT1001450	hsa-miR-548b-5p	CLIP-seq
MIRT1001451	hsa-miR-548c-3p	CLIP-seq
MIRT1001452	hsa-miR-548c-5p	CLIP-seq
MIRT1001453	hsa-miR-548d-5p	CLIP-seq
MIRT1001454	hsa-miR-548h	CLIP-seq
MIRT1001455	hsa-miR-548i	CLIP-seq
MIRT1001456	hsa-miR-548j	CLIP-seq
MIRT1001457	hsa-miR-548k	CLIP-seq
MIRT1001458	hsa-miR-548l	CLIP-seq
MIRT1001459	hsa-miR-548w	CLIP-seq
MIRT1001460	hsa-miR-548y	CLIP-seq
MIRT1001461	hsa-miR-556-3p	CLIP-seq
MIRT1001462	hsa-miR-557	CLIP-seq
MIRT1001463	hsa-miR-559	CLIP-seq
MIRT1001464	hsa-miR-580	CLIP-seq
MIRT1001465	hsa-miR-583	CLIP-seq
MIRT1001466	hsa-miR-584	CLIP-seq
MIRT1001467	hsa-miR-588	CLIP-seq
MIRT1001468	hsa-miR-590-3p	CLIP-seq
MIRT1001469	hsa-miR-591	CLIP-seq
MIRT1996764	hsa-miR-599	CLIP-seq
MIRT1001470	hsa-miR-615-5p	CLIP-seq
MIRT1001472	hsa-miR-625	CLIP-seq
MIRT1001474	hsa-miR-637	CLIP-seq
MIRT1996765	hsa-miR-644	CLIP-seq
MIRT1996766	hsa-miR-659	CLIP-seq
MIRT1001476	hsa-miR-765	CLIP-seq
MIRT1001477	hsa-miR-769-3p	CLIP-seq
MIRT1001478	hsa-miR-802	CLIP-seq
MIRT1001479	hsa-miR-93	CLIP-seq
MIRT1001323	hsa-miR-106a	CLIP-seq
MIRT1001324	hsa-miR-106b	CLIP-seq
MIRT2230693	hsa-miR-1200	CLIP-seq
MIRT1001325	hsa-miR-1207-3p	CLIP-seq
MIRT1001326	hsa-miR-1231	CLIP-seq
MIRT1001327	hsa-miR-1243	CLIP-seq
MIRT1001328	hsa-miR-1255a	CLIP-seq
MIRT1001329	hsa-miR-1255b	CLIP-seq
MIRT2230694	hsa-miR-1265	CLIP-seq
MIRT1001330	hsa-miR-1267	CLIP-seq
MIRT1996751	hsa-miR-1273g	CLIP-seq
MIRT1001331	hsa-miR-1275	CLIP-seq
MIRT1001333	hsa-miR-132	CLIP-seq
MIRT1001334	hsa-miR-141	CLIP-seq
MIRT1001335	hsa-miR-142-5p	CLIP-seq
MIRT1996752	hsa-miR-147	CLIP-seq
MIRT1001336	hsa-miR-149	CLIP-seq
MIRT1001337	hsa-miR-17	CLIP-seq
MIRT1996753	hsa-miR-183	CLIP-seq
MIRT1001338	hsa-miR-186	CLIP-seq
MIRT1001339	hsa-miR-1915	CLIP-seq
MIRT1001340	hsa-miR-194	CLIP-seq
MIRT2230695	hsa-miR-197	CLIP-seq
MIRT1001341	hsa-miR-200a	CLIP-seq
MIRT1001342	hsa-miR-203	CLIP-seq
MIRT1001344	hsa-miR-2052	CLIP-seq
MIRT1001346	hsa-miR-20a	CLIP-seq
MIRT1001347	hsa-miR-20b	CLIP-seq
MIRT1001349	hsa-miR-212	CLIP-seq
MIRT1001350	hsa-miR-2276	CLIP-seq
MIRT1001351	hsa-miR-23a	CLIP-seq
MIRT1001352	hsa-miR-23b	CLIP-seq
MIRT1001353	hsa-miR-23c	CLIP-seq
MIRT1001354	hsa-miR-2681	CLIP-seq
MIRT1001355	hsa-miR-3064-5p	CLIP-seq
MIRT1001356	hsa-miR-3074-3p	CLIP-seq
MIRT1001357	hsa-miR-30a	CLIP-seq
MIRT1001358	hsa-miR-30b	CLIP-seq
MIRT1001359	hsa-miR-30c	CLIP-seq
MIRT1001360	hsa-miR-30d	CLIP-seq
MIRT1001361	hsa-miR-30e	CLIP-seq
MIRT2230696	hsa-miR-3129-3p	CLIP-seq
MIRT1001362	hsa-miR-3132	CLIP-seq
MIRT1001363	hsa-miR-3133	CLIP-seq
MIRT2230697	hsa-miR-3143	CLIP-seq
MIRT1001364	hsa-miR-3147	CLIP-seq
MIRT1001365	hsa-miR-3150b-3p	CLIP-seq
MIRT1001366	hsa-miR-3153	CLIP-seq
MIRT1001367	hsa-miR-3159	CLIP-seq
MIRT1001368	hsa-miR-3161	CLIP-seq
MIRT1001369	hsa-miR-3170	CLIP-seq
MIRT1001370	hsa-miR-3190	CLIP-seq
MIRT2230698	hsa-miR-3200-5p	CLIP-seq
MIRT1001371	hsa-miR-323b-5p	CLIP-seq
MIRT1001372	hsa-miR-330-3p	CLIP-seq
MIRT1001373	hsa-miR-338-3p	CLIP-seq
MIRT1001374	hsa-miR-338-5p	CLIP-seq
MIRT1001375	hsa-miR-3591-3p	CLIP-seq
MIRT2230699	hsa-miR-3605-5p	CLIP-seq
MIRT1001376	hsa-miR-361-3p	CLIP-seq
MIRT2230700	hsa-miR-361-5p	CLIP-seq
MIRT1001377	hsa-miR-3616-3p	CLIP-seq
MIRT2230701	hsa-miR-3617	CLIP-seq
MIRT2230702	hsa-miR-3618	CLIP-seq
MIRT1001378	hsa-miR-3619-3p	CLIP-seq
MIRT1001380	hsa-miR-3658	CLIP-seq
MIRT1001381	hsa-miR-3662	CLIP-seq
MIRT1001382	hsa-miR-3674	CLIP-seq
MIRT1001383	hsa-miR-3691-5p	CLIP-seq
MIRT2230703	hsa-miR-3692	CLIP-seq
MIRT1001384	hsa-miR-374a	CLIP-seq
MIRT1001385	hsa-miR-374b	CLIP-seq
MIRT1996754	hsa-miR-380	CLIP-seq
MIRT1996755	hsa-miR-3911	CLIP-seq
MIRT1996756	hsa-miR-3915	CLIP-seq
MIRT1001386	hsa-miR-3918	CLIP-seq
MIRT1996757	hsa-miR-3924	CLIP-seq
MIRT1996758	hsa-miR-3928	CLIP-seq
MIRT1001387	hsa-miR-3936	CLIP-seq
MIRT1001389	hsa-miR-3978	CLIP-seq
MIRT1001390	hsa-miR-410	CLIP-seq
MIRT2230704	hsa-miR-412	CLIP-seq
MIRT1001391	hsa-miR-4260	CLIP-seq
MIRT1001392	hsa-miR-4267	CLIP-seq
MIRT1996759	hsa-miR-4280	CLIP-seq
MIRT2230705	hsa-miR-4303	CLIP-seq
MIRT1001393	hsa-miR-431	CLIP-seq
MIRT1001394	hsa-miR-4311	CLIP-seq
MIRT1001395	hsa-miR-4318	CLIP-seq
MIRT1996760	hsa-miR-432	CLIP-seq
MIRT2230706	hsa-miR-4324	CLIP-seq
MIRT1001396	hsa-miR-4325	CLIP-seq
MIRT1001397	hsa-miR-4422	CLIP-seq
MIRT1001398	hsa-miR-4425	CLIP-seq
MIRT1001399	hsa-miR-4451	CLIP-seq
MIRT2230707	hsa-miR-4461	CLIP-seq
MIRT1001400	hsa-miR-4476	CLIP-seq
MIRT2230708	hsa-miR-4490	CLIP-seq
MIRT1996761	hsa-miR-4495	CLIP-seq
MIRT2230709	hsa-miR-4501	CLIP-seq
MIRT2230710	hsa-miR-4502	CLIP-seq
MIRT1001401	hsa-miR-450b-3p	CLIP-seq
MIRT1001402	hsa-miR-450b-5p	CLIP-seq
MIRT1001403	hsa-miR-451b	CLIP-seq
MIRT1001404	hsa-miR-4525	CLIP-seq
MIRT1001405	hsa-miR-4529-5p	CLIP-seq
MIRT1001406	hsa-miR-4533	CLIP-seq
MIRT1001407	hsa-miR-4535	CLIP-seq
MIRT1001408	hsa-miR-4637	CLIP-seq
MIRT2230711	hsa-miR-4643	CLIP-seq
MIRT2230712	hsa-miR-4659a-3p	CLIP-seq
MIRT2230713	hsa-miR-4659b-3p	CLIP-seq
MIRT2230714	hsa-miR-466	CLIP-seq
MIRT1001409	hsa-miR-4665-5p	CLIP-seq
MIRT1001410	hsa-miR-4666-3p	CLIP-seq
MIRT2230715	hsa-miR-4666-5p	CLIP-seq
MIRT2230716	hsa-miR-4668-3p	CLIP-seq
MIRT1001411	hsa-miR-4685-5p	CLIP-seq
MIRT2230717	hsa-miR-4686	CLIP-seq
MIRT1001413	hsa-miR-4701-5p	CLIP-seq
MIRT1001414	hsa-miR-4705	CLIP-seq
MIRT1001415	hsa-miR-4721	CLIP-seq
MIRT1001416	hsa-miR-4723-5p	CLIP-seq
MIRT1001418	hsa-miR-4726-3p	CLIP-seq
MIRT1996762	hsa-miR-4728-3p	CLIP-seq
MIRT1001419	hsa-miR-4729	CLIP-seq
MIRT1001420	hsa-miR-4731-3p	CLIP-seq
MIRT2230718	hsa-miR-4735-5p	CLIP-seq
MIRT1001421	hsa-miR-4752	CLIP-seq
MIRT1001423	hsa-miR-4768-5p	CLIP-seq
MIRT1001424	hsa-miR-4772-3p	CLIP-seq
MIRT2230719	hsa-miR-4774-5p	CLIP-seq
MIRT1001425	hsa-miR-4775	CLIP-seq
MIRT1001426	hsa-miR-4776-5p	CLIP-seq
MIRT1001427	hsa-miR-4777-3p	CLIP-seq
MIRT1001428	hsa-miR-4784	CLIP-seq
MIRT2230720	hsa-miR-4789-3p	CLIP-seq
MIRT1001429	hsa-miR-4789-5p	CLIP-seq
MIRT1001430	hsa-miR-4794	CLIP-seq
MIRT1996763	hsa-miR-4795-3p	CLIP-seq
MIRT1001431	hsa-miR-4801	CLIP-seq
MIRT1001432	hsa-miR-494	CLIP-seq
MIRT1001433	hsa-miR-507	CLIP-seq
MIRT1001434	hsa-miR-511	CLIP-seq
MIRT1001435	hsa-miR-516b	CLIP-seq
MIRT1001436	hsa-miR-518a-5p	CLIP-seq
MIRT1001437	hsa-miR-519a	CLIP-seq
MIRT1001438	hsa-miR-519b-3p	CLIP-seq
MIRT1001439	hsa-miR-519c-3p	CLIP-seq
MIRT1001440	hsa-miR-519d	CLIP-seq
MIRT1001444	hsa-miR-526b	CLIP-seq
MIRT1001445	hsa-miR-527	CLIP-seq
MIRT1001446	hsa-miR-539	CLIP-seq
MIRT2230721	hsa-miR-543	CLIP-seq
MIRT2230722	hsa-miR-544b	CLIP-seq
MIRT1001447	hsa-miR-548a-5p	CLIP-seq
MIRT1001448	hsa-miR-548ab	CLIP-seq
MIRT1001449	hsa-miR-548ak	CLIP-seq
MIRT1001450	hsa-miR-548b-5p	CLIP-seq
MIRT1001451	hsa-miR-548c-3p	CLIP-seq
MIRT1001452	hsa-miR-548c-5p	CLIP-seq
MIRT1001453	hsa-miR-548d-5p	CLIP-seq
MIRT1001454	hsa-miR-548h	CLIP-seq
MIRT1001455	hsa-miR-548i	CLIP-seq
MIRT1001456	hsa-miR-548j	CLIP-seq
MIRT1001457	hsa-miR-548k	CLIP-seq
MIRT1001458	hsa-miR-548l	CLIP-seq
MIRT2230723	hsa-miR-548u	CLIP-seq
MIRT1001459	hsa-miR-548w	CLIP-seq
MIRT1001460	hsa-miR-548y	CLIP-seq
MIRT1001461	hsa-miR-556-3p	CLIP-seq
MIRT1001462	hsa-miR-557	CLIP-seq
MIRT1001463	hsa-miR-559	CLIP-seq
MIRT2230724	hsa-miR-579	CLIP-seq
MIRT1001464	hsa-miR-580	CLIP-seq
MIRT1001465	hsa-miR-583	CLIP-seq
MIRT1001466	hsa-miR-584	CLIP-seq
MIRT1001467	hsa-miR-588	CLIP-seq
MIRT1001468	hsa-miR-590-3p	CLIP-seq
MIRT1001469	hsa-miR-591	CLIP-seq
MIRT1996764	hsa-miR-599	CLIP-seq
MIRT1001470	hsa-miR-615-5p	CLIP-seq
MIRT1001472	hsa-miR-625	CLIP-seq
MIRT1001473	hsa-miR-634	CLIP-seq
MIRT1001474	hsa-miR-637	CLIP-seq
MIRT2230725	hsa-miR-641	CLIP-seq
MIRT1996765	hsa-miR-644	CLIP-seq
MIRT1001475	hsa-miR-654-3p	CLIP-seq
MIRT1996766	hsa-miR-659	CLIP-seq
MIRT2230726	hsa-miR-760	CLIP-seq
MIRT1001476	hsa-miR-765	CLIP-seq
MIRT1001477	hsa-miR-769-3p	CLIP-seq
MIRT1001478	hsa-miR-802	CLIP-seq
MIRT1001479	hsa-miR-93	CLIP-seq
MIRT2230727	hsa-miR-934	CLIP-seq
MIRT1001327	hsa-miR-1243	CLIP-seq
MIRT1001328	hsa-miR-1255a	CLIP-seq
MIRT1001329	hsa-miR-1255b	CLIP-seq
MIRT1001338	hsa-miR-186	CLIP-seq
MIRT1001381	hsa-miR-3662	CLIP-seq
MIRT1001432	hsa-miR-494	CLIP-seq
MIRT1001366	hsa-miR-3153	CLIP-seq
MIRT1001394	hsa-miR-4311	CLIP-seq
MIRT1001465	hsa-miR-583	CLIP-seq
MIRT1001366	hsa-miR-3153	CLIP-seq
MIRT1001394	hsa-miR-4311	CLIP-seq
MIRT1001465	hsa-miR-583	CLIP-seq

Transcription factors

Transcription factor	Regulation	Reference
AR	Unknown	12750453
CREB1	Unknown	22577344
FOS	Unknown	22577344
TFAP2A	Unknown	22577344

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000122	Process	Negative regulation of transcription by RNA polymerase II	IEA
GO:0000785	Component	Chromatin	ISA
GO:0000976	Function	Transcription cis-regulatory region binding	IDA	16087863, 16331276, 19127412
GO:0000976	Function	Transcription cis-regulatory region binding	IEA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IDA	25802280
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	ISA
GO:0001228	Function	DNA-binding transcription activator activity, RNA polymerase II-specific	IC	25802280
GO:0001228	Function	DNA-binding transcription activator activity, RNA polymerase II-specific	ISS
GO:0001650	Component	Fibrillar center	IDA
GO:0003677	Function	DNA binding	IDA	9931457
GO:0003677	Function	DNA binding	IEA
GO:0003682	Function	Chromatin binding	IEA
GO:0003700	Function	DNA-binding transcription factor activity	IEA
GO:0003700	Function	DNA-binding transcription factor activity	TAS	8652662
GO:0005515	Function	Protein binding	IPI	22722839, 23260764, 33640491
GO:0005634	Component	Nucleus	IDA	9931457, 20160041
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005902	Component	Microvillus	IEA
GO:0006325	Process	Chromatin organization	IEA
GO:0006338	Process	Chromatin remodeling	IEA
GO:0006338	Process	Chromatin remodeling	ISS
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IEA
GO:0007219	Process	Notch signaling pathway	IEA
GO:0007224	Process	Smoothened signaling pathway	IEA
GO:0009653	Process	Anatomical structure morphogenesis	IBA
GO:0010468	Process	Regulation of gene expression	IEA
GO:0010719	Process	Negative regulation of epithelial to mesenchymal transition	IMP	20160041
GO:0019904	Function	Protein domain specific binding	IEA
GO:0021904	Process	Dorsal/ventral neural tube patterning	IEA
GO:0030154	Process	Cell differentiation	IBA
GO:0030182	Process	Neuron differentiation	IEA
GO:0030324	Process	Lung development	IEA
GO:0032355	Process	Response to estradiol	IDA	16087863
GO:0033148	Process	Positive regulation of intracellular estrogen receptor signaling pathway	IMP	16087863
GO:0035239	Process	Tube morphogenesis	IEA
GO:0042445	Process	Hormone metabolic process	IEA
GO:0042593	Process	Glucose homeostasis	IEA
GO:0043065	Process	Positive regulation of apoptotic process	IDA	19127412
GO:0043565	Function	Sequence-specific DNA binding	IEA
GO:0045880	Process	Positive regulation of smoothened signaling pathway	IEA
GO:0045931	Process	Positive regulation of mitotic cell cycle	IMP	16087863
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IDA	16331276, 19127412, 20160041
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IMP	16087863
GO:0048646	Process	Anatomical structure formation involved in morphogenesis	IEA
GO:0048665	Process	Neuron fate specification	IEA
GO:0051091	Process	Positive regulation of DNA-binding transcription factor activity	IMP	16087863
GO:0051726	Process	Regulation of cell cycle	IEA
GO:0060425	Process	Lung morphogenesis	IEA
GO:0060441	Process	Epithelial tube branching involved in lung morphogenesis	IEA
GO:0060487	Process	Lung epithelial cell differentiation	IEA
GO:0060528	Process	Secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development	IEA
GO:0060739	Process	Mesenchymal-epithelial cell signaling involved in prostate gland development	IEA
GO:0060740	Process	Prostate gland epithelium morphogenesis	IEA
GO:0060741	Process	Prostate gland stromal morphogenesis	IEA
GO:0060743	Process	Epithelial cell maturation involved in prostate gland development	IEA
GO:0061144	Process	Alveolar secondary septum development	IEA
GO:0061448	Process	Connective tissue development	IEA
GO:0071542	Process	Dopaminergic neuron differentiation	IEA
GO:0071542	Process	Dopaminergic neuron differentiation	TAS	24431302
GO:1902691	Process	Respiratory basal cell differentiation	IEA
GO:1902895	Process	Positive regulation of miRNA transcription	IC	25802280
GO:1904340	Process	Positive regulation of dopaminergic neuron differentiation	IEA
GO:1990837	Function	Sequence-specific double-stranded DNA binding	IDA	28473536
GO:2000049	Process	Positive regulation of cell-cell adhesion mediated by cadherin	IC	20160041

Other IDs

• MIM: 602294
• HGNC: 5021
• e!Ensembl: ENSG00000129514

Protein

• UniProt ID: P55317
• Protein name: Hepatocyte nuclear factor 3-alpha (HNF-3-alpha) (HNF-3A) (Forkhead box protein A1) (Transcription factor 3A) (TCF-3A)
• Protein function: Transcription factor that is involved in embryonic development, establishment of tissue-specific gene expression and regulation of gene expression in differentiated tissues. Is thought to act as a 'pioneer' factor opening the compacted chromatin
• PDB: 7VOX, 8VFY, 8VFZ, 8VG1, 8VG2
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF08430	Forkhead_N	17 → 169	Forkhead N-terminal region	Family
  PF00250	Forkhead	169 → 255	Forkhead domain	Domain
  PF09354	HNF_C	397 → 461	HNF3 C-terminal domain	Domain

• Tissue specificity: TISSUE SPECIFICITY: Highly expressed in prostate and ESR1-positive breast tumors. Overexpressed in esophageal and lung adenocarcinomas. {ECO:0000269|PubMed:12234996, ECO:0000269|PubMed:15987773, ECO:0000269|PubMed:16331276}.
• Sequence:

  MLGTVKMEGHETSDWNSYYADTQEAYSSVPVSNMNSGLGSMNSMNTYMTMNTMTTSGNMT
  PASFNMSYANPGLGAGLSPGAVAGMPGGSAGAMNSMTAAGVTAMGTALSPSGMGAMGAQQ
  AASMNGLGPYAAAMNPCMSPMAYAPSNLGRSRAGGGGDAKTFKRSYPHAKPPYSYISLIT
  MAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGK
  GSYWTLHPDSGNMFENGCYLRRQKRFKCEKQPGAGGGGGSGSGGSGAKGGPESRKDPSGA
  SNPSADSPLHRGVHGKTGQLEGAPAPGPAASPQTLDHSGATATGGASELKTPASSTAPPI
  SSGPGALASVPASHPAHGLAPHESQLHLKGDPHYSFNHPFSINNLMSSSEQQHKLDFKAY
  EQALQYSPYGSTLPASLPLGSASVTTRSPIEPSALEPAYYQGVYSRPVLNTS

• Sequence length: 472

Pathways

Reactome:

Estrogen-dependent gene expression