Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3164
Gene name Gene Name - the full gene name approved by the HGNC.
Nuclear receptor subfamily 4 group A member 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
NR4A1
Synonyms (NCBI Gene) Gene synonyms aliases
GFRP1, HMR, N10, NAK-1, NGFIB, NP10, NUR77, TR3
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q13.13
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the steroid-thyroid hormone-retinoid receptor superfamily. Expression is induced by phytohemagglutinin in human lymphocytes and by serum stimulation of arrested fibroblasts. The encoded protein acts as a nuclear transcription
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018925 hsa-miR-335-5p Microarray 18185580
MIRT023110 hsa-miR-124-3p Microarray 18668037
MIRT026031 hsa-miR-196a-5p Sequencing 20371350
MIRT032110 hsa-let-7d-5p Sequencing 20371350
MIRT048853 hsa-miR-93-5p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
HDAC7 Unknown 15623513
HIF1A Activation 14729605
MEF2C Repression 18079734
PML Repression 12032831
SP1 Unknown 8961265
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IEA
GO:0000785 Component Chromatin ISA
GO:0000785 Component Chromatin ISS
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
139139 7980 ENSG00000123358
Protein
UniProt ID P22736
Protein name Nuclear receptor subfamily 4immunitygroup A member 1 (Early response protein NAK1) (Nuclear hormone receptor NUR/77) (Nur77) (Orphan nuclear receptor HMR) (Orphan nuclear receptor TR3) (ST-59) (Testicular receptor 3)
Protein function Orphan nuclear receptor. Binds the NGFI-B response element (NBRE) 5'-AAAGGTCA-3' (PubMed:18690216, PubMed:8121493, PubMed:9315652). Binds 9-cis-retinoic acid outside of its ligand-binding (NR LBD) domain (PubMed:18690216). Participates in energy
PDB 2QW4 , 3V3E , 3V3Q , 4JGV , 4KZI , 4KZJ , 4KZM , 4RE8 , 4REE , 4REF , 4RZE , 4RZF , 4RZG , 4WHF , 4WHG , 6KZ5 , 6LC1 , 8WUY , 8Y7L
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00105 zf-C4 265 334 Zinc finger, C4 type (two domains) Domain
PF00104 Hormone_recep 394 579 Ligand-binding domain of nuclear hormone receptor Domain
Tissue specificity TISSUE SPECIFICITY: Fetal muscle and adult liver, brain and thyroid.
Sequence
MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVK
EVVRTDSLKGRRGRLPSKPKQPPDAS
PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLE
DLVPPPPIIDKIFMDTLPF
Sequence length 598
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  MAPK signaling pathway
PI3K-Akt signaling pathway
Aldosterone synthesis and secretion
Cortisol synthesis and secretion
Cushing syndrome
  AKT phosphorylates targets in the nucleus
Nuclear Receptor transcription pathway
Constitutive Signaling by AKT1 E17K in Cancer
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Oligodendroglioma Oligodendroglioma N/A N/A GWAS
Tremor Essential tremor N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Acute Phase Reaction Associate 27960568
Adenocarcinoma Associate 35713363
Adenocarcinoma Inhibit 36770929
Adenocarcinoma Follicular Associate 18727708
Adenocarcinoma Mucinous Associate 32781417
Agnosia Stimulate 16945123, 40612672
Allan Herndon Dudley syndrome Associate 35029184
Alzheimer Disease Associate 18248459
Anemia Hemolytic Associate 34880407
Angiomyolipoma Associate 18374399