Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3111
Gene name Gene Name - the full gene name approved by the HGNC.
Major histocompatibility complex, class II, DO alpha
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HLA-DOA
Synonyms (NCBI Gene) Gene synonyms aliases
HLA-DNA, HLA-DZA, HLADZ
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6p21.32
Summary Summary of gene provided in NCBI Entrez Gene.
HLA-DOA belongs to the HLA class II alpha chain paralogues. HLA-DOA forms a heterodimer with HLA-DOB. The heterodimer, HLA-DO, is found in lysosomes in B cells and regulates HLA-DM-mediated peptide loading on MHC class II molecules. In comparison with cla
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT491507 hsa-miR-6732-5p PAR-CLIP 23592263
MIRT491505 hsa-miR-3928-3p PAR-CLIP 23592263
MIRT491503 hsa-miR-3184-5p PAR-CLIP 23592263
MIRT491504 hsa-miR-423-5p PAR-CLIP 23592263
MIRT491502 hsa-miR-1914-3p PAR-CLIP 23592263
Transcription factors
Transcription factor Regulation Reference
CIITA Activation 11823510
RFX5 Unknown 11258423
RFXANK Unknown 11258423
RFXAP Unknown 11258423
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0002250 Process Adaptive immune response IEA
GO:0002587 Process Negative regulation of antigen processing and presentation of peptide antigen via MHC class II IDA 22733780
GO:0005515 Function Protein binding IPI 25416956
GO:0005765 Component Lysosomal membrane TAS
GO:0005886 Component Plasma membrane TAS 3000765
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
142930 4936 ENSG00000204252
Protein
UniProt ID P06340
Protein name HLA class II histocompatibility antigen, DO alpha chain (MHC DN-alpha) (MHC DZ alpha) (MHC class II antigen DOA)
Protein function Important modulator in the HLA class II restricted antigen presentation pathway by interaction with the HLA-DM molecule in B-cells. Modifies peptide exchange activity of HLA-DM.
PDB 4I0P
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00993 MHC_II_alpha 29 109 Class II histocompatibility antigen, alpha domain Domain
PF07654 C1-set 115 196 Immunoglobulin C1-set domain Domain
Sequence
Sequence length 250
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Phagosome
Cell adhesion molecules
Antigen processing and presentation
Hematopoietic cell lineage
Th1 and Th2 cell differentiation
Th17 cell differentiation
Intestinal immune network for IgA production
Type I diabetes mellitus
Leishmaniasis
Toxoplasmosis
Staphylococcus aureus infection
Tuberculosis
Influenza A
Human T-cell leukemia virus 1 infection
Herpes simplex virus 1 infection
Epstein-Barr virus infection
Asthma
Autoimmune thyroid disease
Inflammatory bowel disease
Systemic lupus erythematosus
Rheumatoid arthritis
Allograft rejection
Graft-versus-host disease
Viral myocarditis
  MHC class II antigen presentation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Prostate cancer Prostate cancer, familial rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582 29892016
Prostate cancer, hereditary PROSTATE CANCER, HEREDITARY, 1 rs387906327, rs193929331, rs74315365, rs397516896, rs794729219, rs121913349, rs587782641, rs1114167673, rs1597371666, rs2073394466 29892016
Rheumatoid arthritis Rheumatoid Arthritis rs587776843 19503088, 17804836, 21156761