Gene Gene information from NCBI Gene database.
Entrez ID 3082
Gene name Hepatocyte growth factor
Gene symbol HGF
Synonyms (NCBI Gene)
DFNB39F-TCFHGFBHPTASF
Chromosome 7
Chromosome location 7q21.11
Summary This gene encodes a protein that binds to the hepatocyte growth factor receptor to regulate cell growth, cell motility and morphogenesis in numerous cell and tissue types. Alternative splicing results in multiple transcript variants, at least one of which
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs137853235 C>T Pathogenic Synonymous variant, intron variant, coding sequence variant
rs145494248 C>G,T Benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, missense variant
rs145598174 A>G Likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs148714837 C>T Benign-likely-benign, likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, genic downstream transcript variant, coding sequence variant
rs367800414 A>G Conflicting-interpretations-of-pathogenicity Synonymous variant, genic downstream transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
58
miRTarBase ID miRNA Experiments Reference
MIRT054477 hsa-miR-199a-3p Luciferase reporter assayQRTPCRWestern blot 23657814
MIRT054645 hsa-miR-26a-5p ELISAImmunohistochemistryLuciferase reporter assayqRT-PCRWestern blot 28393839
MIRT054645 hsa-miR-26a-5p ELISAImmunohistochemistryLuciferase reporter assayqRT-PCRWestern blot 28393839
MIRT054645 hsa-miR-26a-5p ELISALuciferase reporter assayqRT-PCR 28386375
MIRT732936 hsa-miR-144-3p RNA-seq 33804111
Transcription factors Transcription factors information provided by TRRUST V2 database.
6
Transcription factor Regulation Reference
NFIC Unknown 10860846
SP1 Activation 9223667
SP3 Activation 9223667
STAT3 Activation 12168776
STAT3 Unknown 23954444
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
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GO ID Ontology Definition Evidence Reference
GO:0000278 Process Mitotic cell cycle NAS 2531289
GO:0000902 Process Cell morphogenesis IEA
GO:0001837 Process Epithelial to mesenchymal transition TAS 14679171
GO:0001889 Process Liver development IEA
GO:0004175 Function Endopeptidase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
142409 4893 ENSG00000019991
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P14210
Protein name Hepatocyte growth factor (Hepatopoietin-A) (Scatter factor) (SF) [Cleaved into: Hepatocyte growth factor alpha chain; Hepatocyte growth factor beta chain]
Protein function Potent mitogen for mature parenchymal hepatocyte cells, seems to be a hepatotrophic factor, and acts as a growth factor for a broad spectrum of tissues and cell types (PubMed:20624990). Activating ligand for the receptor tyrosine kinase MET by b
PDB 1BHT , 1GMN , 1GMO , 1GP9 , 1NK1 , 1SHY , 1SI5 , 2HGF , 2QJ2 , 3HMS , 3HMT , 3HN4 , 3MKP , 3SP8 , 4D3C , 4K3J , 4O3T , 4O3U , 5COE , 5CP9 , 5CS1 , 5CS3 , 5CS5 , 5CS9 , 5CSQ , 5CT1 , 5CT2 , 5CT3 , 7MO7 , 7MO8 , 7MO9 , 7MOA , 7MOB , 7OCL , 7OCM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00024 PAN_1 40 124 PAN domain Domain
PF00051 Kringle 128 206 Kringle domain Domain
PF00051 Kringle 211 288 Kringle domain Domain
PF00051 Kringle 305 383 Kringle domain Domain
PF00051 Kringle 391 469 Kringle domain Domain
PF00089 Trypsin 495 716 Trypsin Domain
Sequence
Sequence length 728
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  EGFR tyrosine kinase inhibitor resistance
MAPK signaling pathway
Ras signaling pathway
Rap1 signaling pathway
Calcium signaling pathway
PI3K-Akt signaling pathway
Focal adhesion
Malaria
Pathways in cancer
Proteoglycans in cancer
Chemical carcinogenesis - reactive oxygen species
Renal cell carcinoma
Melanoma
Non-small cell lung cancer
Hepatocellular carcinoma
Gastric cancer
  Platelet degranulation
PIP3 activates AKT signaling
Constitutive Signaling by Aberrant PI3K in Cancer
RAF/MAP kinase cascade
Interleukin-4 and Interleukin-13 signaling
MET Receptor Activation
Negative regulation of MET activity
PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
MET activates RAS signaling
MET activates PI3K/AKT signaling
MET activates PTPN11
MET activates PTK2 signaling
MET interacts with TNS proteins
MET activates RAP1 and RAC1
MET receptor recycling
MET activates STAT3
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
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Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal recessive nonsyndromic hearing loss 39 Pathogenic rs137853235, rs1788701297, rs900334407 RCV000016089
RCV000016090
RCV000016091
Sensorineural hearing loss disorder Pathogenic rs1788701297 RCV005420504
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Hearing impairment Uncertain significance rs747516423 RCV001375429
Hepatocellular carcinoma Benign rs2074725 RCV005923494
HGF-related disorder Uncertain significance; Conflicting classifications of pathogenicity; Likely benign rs745851853, rs150267054, rs745648975, rs750744461 RCV003976151
RCV003950280
RCV003921371
RCV003959365
Lung cancer Uncertain significance rs374484762 RCV005888331
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acquired ichthyosis Associate 36303457
Acro Osteolysis Associate 35145077
Acute Disease Associate 38045696
Acute Kidney Injury Inhibit 16501492
Acute Kidney Injury Associate 21618526, 26327776
Acute Lung Injury Stimulate 18065658
Acute Lung Injury Associate 26674641
Adenocarcinoma Associate 7573364
Adenocarcinoma of Lung Associate 11290563, 17459054, 20150826, 26919104, 35635202
Adenocarcinoma of Lung Stimulate 19817696