Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3077
Gene name Gene Name - the full gene name approved by the HGNC.
Homeostatic iron regulator
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HFE
Synonyms (NCBI Gene) Gene synonyms aliases
HFE1, HH, HLA-H, MVCD7, TFQTL2
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6p22.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a membrane protein that is similar to MHC class I-type proteins and associates with beta2-microglobulin (beta2M). It is thought that this protein functions to regulate iron absorption by regulating the interaction of th
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs111033558 G>C,T Pathogenic Coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT054541 hsa-miR-200b-3p Western blot, qRT-PCR 23708087
MIRT054542 hsa-miR-200a-3p Western blot, qRT-PCR 23708087
MIRT054543 hsa-miR-200c-3p Western blot, qRT-PCR 23708087
MIRT693483 hsa-miR-4511 HITS-CLIP 23313552
MIRT693482 hsa-miR-4731-3p HITS-CLIP 23313552
Transcription factors
Transcription factor Regulation Reference
PARP1 Unknown 24184271
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0002474 Process Antigen processing and presentation of peptide antigen via MHC class I IKR 8696333
GO:0002709 Process Regulation of T cell mediated immunity IEA
GO:0002725 Process Negative regulation of T cell cytokine production IGI 24643698
GO:0005102 Function Signaling receptor binding IPI 10638746, 24904118
GO:0005515 Function Protein binding IPI 14691533, 15880641, 15965644, 20133674, 20618438, 33961781
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613609 4886 ENSG00000010704
Protein
UniProt ID Q30201
Protein name Hereditary hemochromatosis protein (HLA-H)
Protein function Binds to transferrin receptor (TFR) and reduces its affinity for iron-loaded transferrin.
PDB 1A6Z , 1DE4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00129 MHC_I 26 202 Class I Histocompatibility antigen, domains alpha 1 and 2 Domain
PF07654 C1-set 206 289 Immunoglobulin C1-set domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in all tissues tested except brain.
Sequence
Sequence length 348
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  TGF-beta signaling pathway   Transferrin endocytosis and recycling
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Hereditary Hemochromatosis hereditary hemochromatosis rs111033563, rs146519482, rs749553271, rs765804978, rs1554154042, rs1762684254 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
cardiomyopathy Cardiomyopathy N/A N/A ClinVar
Cystic Fibrosis cystic fibrosis N/A N/A GenCC, ClinVar
Hemochromatosis hemochromatosis type 1 N/A N/A GenCC
Hypertension Hypertension N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 15018631, 18470614
Adenocarcinoma of Lung Associate 31856248
Albuminuria Associate 33941944
Alcohol Withdrawal Seizures Associate 35229939
Alcoholism Associate 19115475, 24556216, 35229939
alpha 1 Antitrypsin Deficiency Associate 17650303, 20208481, 28617828
Alzheimer Disease Associate 11445256, 15060098, 17047092, 20029940, 20164577, 29518107
Amyotrophic lateral sclerosis 1 Associate 33070529
Anemia Associate 10090890, 30984307
Anemia Dyserythropoietic Congenital Associate 10583252, 11071669