Gene Gene information from NCBI Gene database.
Entrez ID 3077
Gene name Homeostatic iron regulator
Gene symbol HFE
Synonyms (NCBI Gene)
HFE1HHHLA-HMVCD7TFQTL2
Chromosome 6
Chromosome location 6p22.2
Summary The protein encoded by this gene is a membrane protein that is similar to MHC class I-type proteins and associates with beta2-microglobulin (beta2M). It is thought that this protein functions to regulate iron absorption by regulating the interaction of th
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs111033558 G>C,T Pathogenic Coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
134
miRTarBase ID miRNA Experiments Reference
MIRT054541 hsa-miR-200b-3p Western blotqRT-PCR 23708087
MIRT054542 hsa-miR-200a-3p Western blotqRT-PCR 23708087
MIRT054543 hsa-miR-200c-3p Western blotqRT-PCR 23708087
MIRT693483 hsa-miR-4511 HITS-CLIP 23313552
MIRT693482 hsa-miR-4731-3p HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
PARP1 Unknown 24184271
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
61
GO ID Ontology Definition Evidence Reference
GO:0002474 Process Antigen processing and presentation of peptide antigen via MHC class I IKR 8696333
GO:0002709 Process Regulation of T cell mediated immunity IEA
GO:0002725 Process Negative regulation of T cell cytokine production IGI 24643698
GO:0005102 Function Signaling receptor binding IPI 10638746, 24904118
GO:0005515 Function Protein binding IPI 14691533, 15880641, 15965644, 20133674, 20618438, 33961781
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613609 4886 ENSG00000010704
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q30201
Protein name Hereditary hemochromatosis protein (HLA-H)
Protein function Binds to transferrin receptor (TFR) and reduces its affinity for iron-loaded transferrin.
PDB 1A6Z , 1DE4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00129 MHC_I 26 202 Class I Histocompatibility antigen, domains alpha 1 and 2 Domain
PF07654 C1-set 206 289 Immunoglobulin C1-set domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in all tissues tested except brain.
Sequence
Sequence length 348
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  TGF-beta signaling pathway   Transferrin endocytosis and recycling
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
343
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Alzheimer disease type 1 Likely pathogenic rs776994377 RCV002249071
Gastric cancer Likely pathogenic; Pathogenic rs573745685 RCV005912576
Hemochromatosis type 1 Likely pathogenic; Pathogenic rs573745685, rs759524388, rs1199530060, rs766992720, rs111033558, rs111033563, rs199916850, rs1192141992, rs773443949, rs749553271, rs765804978, rs1561939338, rs146519482 RCV001376186
RCV003127860
RCV003485713
RCV001582388
RCV000000035
RCV000000036
RCV005045240
RCV003319951
RCV005632652
RCV003230498
RCV003126743
RCV000781466
RCV000190906
Hepatocellular carcinoma Likely pathogenic; Pathogenic rs573745685 RCV005912575
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Bronze diabetes Conflicting classifications of pathogenicity; other; risk factor rs1800562, rs1799945 RCV001248830
RCV001248831
Cardiomyopathy Conflicting classifications of pathogenicity; other; risk factor rs1800562, rs1799945 RCV001731264
RCV001731265
Cutaneous photosensitivity Conflicting classifications of pathogenicity; other; risk factor rs1800562 RCV000414811
Cystic fibrosis Conflicting classifications of pathogenicity; other rs1799945 RCV000991133
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 15018631, 18470614
Adenocarcinoma of Lung Associate 31856248
Albuminuria Associate 33941944
Alcohol Withdrawal Seizures Associate 35229939
Alcoholism Associate 19115475, 24556216, 35229939
alpha 1 Antitrypsin Deficiency Associate 17650303, 20208481, 28617828
Alzheimer Disease Associate 11445256, 15060098, 17047092, 20029940, 20164577, 29518107
Amyotrophic lateral sclerosis 1 Associate 33070529
Anemia Associate 10090890, 30984307
Anemia Dyserythropoietic Congenital Associate 10583252, 11071669