Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3075
Gene name Gene Name - the full gene name approved by the HGNC.
Complement factor H
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CFH
Synonyms (NCBI Gene) Gene synonyms aliases
AHUS1, AMBP1, ARMD4, ARMS1, CFHL3, FH, FHL1, HF, HF1, HF2, HUS
Disease Acronyms (UniProt) Disease acronyms from UniProt database
AHUS1, ARMD4
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q31.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is a member of the Regulator of Complement Activation (RCA) gene cluster and encodes a protein with twenty short consensus repeat (SCR) domains. This protein is secreted into the bloodstream and has an essential role in the regulation of complem
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs460184 T>C Pathogenic Non coding transcript variant, genic downstream transcript variant, coding sequence variant, missense variant
rs460897 C>T Risk-factor, pathogenic Non coding transcript variant, genic downstream transcript variant, coding sequence variant, missense variant
rs800292 G>A Benign, risk-factor, not-provided Non coding transcript variant, coding sequence variant, missense variant
rs1061170 C>A,G,T Benign, risk-factor, pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs1410996 G>A,C Risk-factor Intron variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000303 hsa-miR-146a-5p Western blot 18801740
MIRT000303 hsa-miR-146a-5p Western blot 19540598
MIRT736902 hsa-miR-155-3p Luciferase reporter assay, RNA-seq, Flow cytometry 33037565
MIRT2502241 hsa-miR-1291 CLIP-seq
MIRT2502242 hsa-miR-185 CLIP-seq
Transcription factors
Transcription factor Regulation Reference
SIRT1 Repression 17558024
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 16612335, 17244159, 17293598, 17339482, 18627465, 18786923, 19050261, 19084272, 19225461, 19632990, 19680263, 19850925, 20042240, 21317894, 21979047, 22786770, 24835392, 26468283, 26538390, 28533443, 28671664, 29374201
GO:0005576 Component Extracellular region TAS
GO:0005615 Component Extracellular space TAS 9312129
GO:0006956 Process Complement activation IDA 24835392
GO:0006957 Process Complement activation, alternative pathway IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
134370 4883 ENSG00000000971
Protein
UniProt ID P08603
Protein name Complement factor H (H factor 1)
Protein function Glycoprotein that plays an essential role in maintaining a well-balanced immune response by modulating complement activation. Acts as a soluble inhibitor of complement, where its binding to self markers such as glycan structures prevents complem
PDB 1HAQ , 1HCC , 1HFH , 1HFI , 2BZM , 2G7I , 2IC4 , 2JGW , 2JGX , 2KMS , 2QFG , 2QFH , 2RLP , 2RLQ , 2UWN , 2V8E , 2W80 , 2W81 , 2WII , 2XQW , 3GAU , 3GAV , 3GAW , 3KXV , 3KZJ , 3OXU , 3R62 , 3RJ3 , 3SW0 , 4AYD , 4AYE , 4AYI , 4AYM , 4B2R , 4B2S , 4J38 , 4K12 , 4ONT , 4ZH1 , 5NBQ , 5O32 , 5O35 , 5WTB , 6ATG , 6ZH1 , 7WKI , 7ZJM , 9F7I
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00084 Sushi 22 80 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 85 141 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 146 205 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 210 262 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 267 320 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 325 386 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 387 442 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 448 505 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 509 564 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 569 623 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 630 684 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 691 744 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 811 864 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 870 926 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 931 984 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 989 1043 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 1048 1102 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 1109 1163 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 1167 1228 Sushi repeat (SCR repeat) Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the retinal pigment epithelium (at protein level) (PubMed:25136834). CFH is one of the most abundant complement components in blood where the liver is the major source of CFH protein in vivo. in addition, CFH is secreted b
Sequence
MRLLAKIICLMLWAICVAEDCNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLG
NVIMVCRKGEWVALNPLRKC
QKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQL
LGEINYRECDTDGWTNDIPIC
EVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNS
GYKIEGDEEMHCSDDGFWSKEKPKC
VEISCKSPDVINGSPISQKIIYKENERFQYKCNMG
YEYSERGDAVCTESGWRPLPSC
EEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYP
ATRGNTAKCTSTGWIPAPRC
TLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEH
FETPSGSYWDHIHCTQDGWSPAVPCL
RKCYFPYLENGYNQNYGRKFVQGKSIDVACHPGY
ALPKAQTTVTCMENGWSPTPRC
IRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLG
YVTADGETSGSITCGKDGWSAQPTC
IKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGY
ESNTGSTTGSIVCGYNGWSDLPIC
YERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPG
FTIVGPNSVQCYHFGLSPDLPIC
KEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCN
PRFLMKGPNKIQCVDGEWTTLPVC
IVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCS
ESFTMIGHRSITCIHGVWTQLPQC
VAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYR
CRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQ
ENYLIQEGEEITCKDGRWQSIPLC
VEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYT
CEGGFRISEENETTCYMGKWSSPPQC
EGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCF
EGFGIDGPAIAKCLGEKWSHPPSC
IKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCAT
YYKMDGASNVTCINSRWTGRPTC
RDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSP
YEMFGDEEVMCLNGNWTEPPQC
KDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQN
LYQLEGNKRITCRNGQWSEPPKC
LHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFV
CKRGYRLSSRSHTLRTTCWDGKLEYPTC
AKR
Sequence length 1231
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Complement and coagulation cascades
Staphylococcus aureus infection
  Regulation of Complement cascade
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Basal laminar drusen BASAL LAMINAR DRUSEN (disorder) rs121913061, rs387906550
Complement component deficiency Complement deficiency disease, Complement Factor H Deficiency rs387906509, rs1467298230, rs1022194067, rs774370086, rs121964922, rs372345940, rs121913052, rs121913053, rs460897, rs121913054, rs121913056, rs121913058, rs796052138, rs41286844, rs121909592
View all (29 more)
24722444, 11170895, 11170896, 11158219, 9312129, 14978182, 10803850, 16612335, 12020532
Doyne honeycomb retinal dystrophy DOYNE HONEYCOMB RETINAL DYSTROPHY rs121434491, rs281865373 18252232
Glomerulonephritis IGA Glomerulonephritis, Glomerulonephritis, Membranoproliferative rs778043831 25305756, 14978182
Unknown
Disease term Disease name Evidence References Source
C3 glomerulopathy C3 glomerulopathy 27458560 ClinVar
Chronic obstructive pulmonary disease Chronic Obstructive Airway Disease 26634245 ClinVar
Drusen basal laminar drusen GenCC
Hemolytic Uremic Syndrome hemolytic uremic syndrome, atypical, susceptibility to, 1, atypical hemolytic-uremic syndrome GenCC
Associations from Text Mining
Disease Name Relationship Type References
Ablepharon macrostomia syndrome Associate 31970928
Abortion Habitual Associate 31861421
Abortion Habitual Inhibit 31861421
Abortion Spontaneous Associate 30131807, 31861421
Acute Kidney Injury Associate 30380547
Adenocarcinoma Associate 24885016
Adenoma Associate 24516561
Alcohol Related Disorders Associate 26045838
Alternating hemiplegia of childhood Associate 17018561, 21555552, 22542290, 25188723, 33384694, 33519811
Alzheimer Disease Associate 18801740, 22660168, 26243271, 35387811, 37480051