Gene Gene information from NCBI Gene database.
Entrez ID 3000
Gene name Guanylate cyclase 2D, retinal
Gene symbol GUCY2D
Synonyms (NCBI Gene)
CACDCACD1CG-ECORD5CORD6CSNB1ICYGDGUC1A4GUC2DLCALCA1RCD2RETGC-1ROS-GC1ROSGCretGC
Chromosome 17
Chromosome location 17p13.1
Summary This gene encodes a retina-specific guanylate cyclase, which is a member of the membrane guanylyl cyclase family. Like other membrane guanylyl cyclases, this enzyme has a hydrophobic amino-terminal signal sequence followed by a large extracellular domain,
SNPs SNP information provided by dbSNP.
67
SNP ID Visualize variation Clinical significance Consequence
rs12602083 G>A,C,T Pathogenic Splice acceptor variant
rs28933695 G>C Pathogenic, not-provided Missense variant, coding sequence variant
rs61749665 G>T Likely-benign, pathogenic, benign Missense variant, coding sequence variant
rs61749668 G>A Likely-pathogenic, not-provided Missense variant, coding sequence variant
rs61749670 C>- Likely-pathogenic, pathogenic, not-provided Frameshift variant, coding sequence variant
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001653 Function Peptide receptor activity IBA
GO:0001750 Component Photoreceptor outer segment IDA 7912093
GO:0004383 Function Guanylate cyclase activity IBA
GO:0004383 Function Guanylate cyclase activity IDA 21928830, 30319355
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600179 4689 ENSG00000132518
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q02846
Protein name Retinal guanylyl cyclase 1 (RETGC-1) (EC 4.6.1.2) (CG-E) (Guanylate cyclase 2D, retinal) (Rod outer segment membrane guanylate cyclase) (ROS-GC)
Protein function Catalyzes the synthesis of cyclic GMP (cGMP) in rods and cones of photoreceptors. Plays an essential role in phototransduction, by mediating cGMP replenishment (PubMed:15123990, PubMed:21928830, PubMed:26100624, PubMed:30319355, PubMed:9600905).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01094 ANF_receptor 72 400 Receptor family ligand binding region Family
PF07714 PK_Tyr_Ser-Thr 554 805 Protein tyrosine and serine/threonine kinase Domain
PF07701 HNOBA 808 865 Heme NO binding associated Domain
PF00211 Guanylate_cyc 871 1058 Adenylate and Guanylate cyclase catalytic domain Domain
Tissue specificity TISSUE SPECIFICITY: Retina. {ECO:0000269|PubMed:7912093}.
Sequence
MTACARRAGGLPDPGLCGPAWWAPSLPRLPRALPRLPLLLLLLLLQPPALSAVFTVGVLG
PWACDPIFSRARPDLAARLAAARLNRDPGLAGGPRFEVALLPEPCRTPGSLGAVSSALAR
VSGLVGPVNPAACRPAELLAEEAGIALVPWGCPWTQAEGTTAPAVTPAADALYALLRAFG
WARVALVTAPQDLWVEAGRSLSTALRARGLPVASVTSMEPLDLSGAREALRKVRDGPRVT
AVIMVMHSVLLGGEEQRYLLEAAEELGLTDGSLVFLPFDTIHYALSPGPEALAALANSSQ
LRRAHDAVLTLTRHCPSEGSVLDSLRRAQERRELPSDLNLQQVSPLFGTIYDAVFLLARG
VAEARAAAGGRWVSGAAVARHIRDAQVPGFCGDLGGDEEP
PFVLLDTDAAGDRLFATYML
DPARGSFLSAGTRMHFPRGGSAPGPDPSCWFDPNNICGGGLEPGLVFLGFLLVVGMGLAG
AFLAHYVRHRLLHMQMVSGPNKIILTVDDITFLHPHGGTSRKVAQGSRSSLGARSMSDIR
SGPSQHLDSPNIGVYEGDRVWLKKFPGDQHIAIRPATKTAFSKLQELRHENVALYLGLFL
ARGAEGPAALWEGNLAVVSEHCTRGSLQDLLAQREIKLDWMFKSSLLLDLIKGIRYLHHR
GVAHGRLKSRNCIVDGRFVLKITDHGHGRLLEAQKVLPEPPRAEDQLWTAPELLRDPALE
RRGTLAGDVFSLAIIMQEVVCRSAPYAMLELTPEEVVQRVRSPPPLCRPLVSMDQAPVEC
ILLMKQCWAEQPELRPSMDHTFDLF
KNINKGRKTNIIDSMLRMLEQYSSNLEDLIRERTE
ELELEKQKTDRLLTQMLPPSVAEAL
KTGTPVEPEYFEQVTLYFSDIVGFTTISAMSEPIE
VVDLLNDLYTLFDAIIGSHDVYKVETIGDAYMVASGLPQRNGQRHAAEIANMSLDILSAV
GTFRMRHMPEVPVRIRIGLHSGPCVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHV
NLSTVGILRALDSGYQVELRGRTELKGKGAEDTFWLVG
RRGFNKPIPKPPDLQPGSSNHG
ISLQEIPPERRRKLEKARPGQFS
Sequence length 1103
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Purine metabolism
Metabolic pathways
Olfactory transduction
Phototransduction
  Inactivation, recovery and regulation of the phototransduction cascade
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
2859
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal recessive optic atrophy Likely pathogenic; Pathogenic rs2151801050, rs2545424818 RCV003389497
RCV003389587
Choroidal dystrophy, central areolar, 1 Pathogenic; Likely pathogenic rs61749679, rs61750168, rs61750184, rs61749668, rs61749670, rs1338490917, rs1567961697, rs747951577, rs756730335, rs940175403, rs772242251, rs61750172, rs750889782, rs757823463, rs1006935198
View all (3 more)
RCV005025142
RCV002477250
RCV000714550
RCV005016379
RCV002498447
RCV005014526
RCV005014543
RCV005014735
RCV002492137
RCV005019589
RCV005019607
RCV001197374
RCV005019167
RCV005021099
RCV000714547
RCV005021138
RCV000791170
RCV005021415
Cone dystrophy Likely pathogenic; Pathogenic rs61749668, rs61750172, rs61750173 RCV000505073
RCV001003042
RCV001003043
Cone-rod dystrophy Likely pathogenic; Pathogenic rs61750173, rs1598150539, rs1598150793 RCV003324497
RCV002267758
RCV002267759
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs763945017, rs1975956582 -
Abnormal electroretinogram Benign; Likely benign rs552184470, rs140638938 RCV000414862
RCV000415352
Cataract Conflicting classifications of pathogenicity rs1975925973 RCV005626326
Nystagmus Benign; Likely benign rs552184470, rs140638938 RCV000414862
RCV000415352
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Alstrom Syndrome Associate 26957854
Amaurosis congenita of Leber type 1 Associate 10711674, 23035049, 32009068, 32255808, 33109612
Anophthalmos Associate 40141357
Atrophy Associate 36509996
Blindness Associate 20517349, 28403437, 33109612, 35314386
Cataract Associate 40141357
Chromosome Aberrations Associate 8104536
Color Vision Defects Associate 36509996
Cone Dystrophy Associate 22194653, 23734073, 24480840, 36509996, 8782056
Cone Rod Dystrophies Associate 10430891, 10507726, 17200655, 18487367, 20517349, 21552474, 23734073, 25515582, 32009068, 33109612, 35314386, 36490268, 37327959, 40478561