Gene Gene information from NCBI Gene database.
Entrez ID 29914
Gene name UbiA prenyltransferase domain containing 1
Gene symbol UBIAD1
Synonyms (NCBI Gene)
SCCDTERE1
Chromosome 1
Chromosome location 1p36.22
Summary This gene encodes a protein thought to be involved in cholesterol and phospholipid metabolism. Mutations in this gene are associated with Schnyder crystalline corneal dystrophy. [provided by RefSeq, Oct 2008]
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs118203949 A>G Pathogenic Missense variant, intron variant, coding sequence variant
rs118203952 G>A Pathogenic Non coding transcript variant, missense variant, intron variant, coding sequence variant
rs118203953 C>G,T Pathogenic Synonymous variant, missense variant, intron variant, coding sequence variant
rs397514669 G>A Pathogenic Coding sequence variant, missense variant, intron variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
314
miRTarBase ID miRNA Experiments Reference
MIRT026804 hsa-miR-192-5p Microarray 19074876
MIRT046775 hsa-miR-222-3p CLASH 23622248
MIRT734970 hsa-miR-4644 Luciferase reporter assayWestern blottingqRT-PCR 33194029
MIRT1469853 hsa-miR-106a CLIP-seq
MIRT1469854 hsa-miR-106b CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
41
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IBA
GO:0000139 Component Golgi membrane IDA 23374346
GO:0000139 Component Golgi membrane IEA
GO:0004659 Function Prenyltransferase activity EXP 20953171, 25874989
GO:0004659 Function Prenyltransferase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611632 30791 ENSG00000120942
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y5Z9
Protein name UbiA prenyltransferase domain-containing protein 1 (EC 2.5.1.-) (EC 2.5.1.39) (Transitional epithelial response protein 1)
Protein function Prenyltransferase that mediates the formation of menaquinone-4 (MK-4) and coenzyme Q10 (PubMed:20953171, PubMed:23374346). MK-4 is a vitamin K2 isoform present at high concentrations in the brain, kidney and pancreas, and is required for endothe
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01040 UbiA 61 328 UbiA prenyltransferase family Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:11314041}.
Sequence
Sequence length 338
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Metabolism of vitamin K
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
118
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Schnyder crystalline corneal dystrophy Likely pathogenic; Pathogenic rs371811409, rs118203945, rs118203946, rs118203947, rs118203948, rs118203949, rs118203950, rs118203951, rs118203952, rs118203953, rs397514669 RCV001731228
RCV000000904
RCV000000905
RCV000000906
RCV000000907
RCV000000908
RCV000000909
RCV000000910
RCV000000911
RCV000000912
RCV000034310
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs11580061 RCV005891463
Cervical cancer Benign rs11580061, rs72856992 RCV005891465
RCV005891456
Cholangiocarcinoma Benign rs11580061 RCV005891469
Chronic lymphocytic leukemia/small lymphocytic lymphoma Benign rs11580061 RCV005891471
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Arcus Senilis Associate 30223810
Calcinosis Inhibit 26890002
Cardiovascular Diseases Associate 23977195
Cholangiocarcinoma Associate 34211100
Corneal Diseases Associate 19649163
Corneal Dystrophy Crystalline of Schnyder Associate 19399176, 19649163, 20505825, 23169578, 23977195, 25742604, 30084067, 30223810, 32188638, 32602245
Dyslipidemias Associate 30223810
Eye Diseases Associate 20505825
Melanoma Associate 35255427
Neoplasms Inhibit 23919967, 23977195