Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	29087
Gene name Gene Name - the full gene name approved by the HGNC.	Thymocyte nuclear protein 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	THYN1
Synonyms (NCBI Gene) Gene synonyms aliases	HSPC144, MDS012, MY105, THY28, THY28KD
Chromosome Chromosome number	11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	11q25
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes a protein that is highly conserved among vertebrates and plant species and may be involved in the induction of apoptosis. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul

Show/Hide all(108)

miRTarBase ID	miRNA	Experiments	Reference
MIRT569516	hsa-miR-548ac	PAR-CLIP	20371350
MIRT569515	hsa-miR-548bb-3p	PAR-CLIP	20371350
MIRT569514	hsa-miR-548d-3p	PAR-CLIP	20371350
MIRT569513	hsa-miR-548h-3p	PAR-CLIP	20371350
MIRT569512	hsa-miR-548z	PAR-CLIP	20371350
MIRT569511	hsa-miR-548aa	PAR-CLIP	20371350
MIRT569510	hsa-miR-548ap-3p	PAR-CLIP	20371350
MIRT569509	hsa-miR-548t-3p	PAR-CLIP	20371350
MIRT569508	hsa-miR-497-3p	PAR-CLIP	20371350
MIRT569506	hsa-miR-4731-3p	PAR-CLIP	20371350
MIRT569507	hsa-miR-4801	PAR-CLIP	20371350
MIRT569505	hsa-miR-181a-2-3p	PAR-CLIP	20371350
MIRT569504	hsa-miR-4726-3p	PAR-CLIP	20371350
MIRT569503	hsa-miR-7162-3p	PAR-CLIP	20371350
MIRT569502	hsa-let-7a-5p	PAR-CLIP	20371350
MIRT569501	hsa-let-7b-5p	PAR-CLIP	20371350
MIRT569500	hsa-let-7c-5p	PAR-CLIP	20371350
MIRT569499	hsa-let-7d-5p	PAR-CLIP	20371350
MIRT569498	hsa-let-7e-5p	PAR-CLIP	20371350
MIRT569497	hsa-let-7f-5p	PAR-CLIP	20371350
MIRT569496	hsa-let-7g-5p	PAR-CLIP	20371350
MIRT569495	hsa-let-7i-5p	PAR-CLIP	20371350
MIRT569494	hsa-miR-4458	PAR-CLIP	20371350
MIRT569493	hsa-miR-4500	PAR-CLIP	20371350
MIRT569492	hsa-miR-98-5p	PAR-CLIP	20371350
MIRT569491	hsa-miR-202-3p	PAR-CLIP	20371350
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT569516	hsa-miR-548ac	PAR-CLIP	20371350
MIRT569515	hsa-miR-548bb-3p	PAR-CLIP	20371350
MIRT569514	hsa-miR-548d-3p	PAR-CLIP	20371350
MIRT569513	hsa-miR-548h-3p	PAR-CLIP	20371350
MIRT569512	hsa-miR-548z	PAR-CLIP	20371350
MIRT569511	hsa-miR-548aa	PAR-CLIP	20371350
MIRT569510	hsa-miR-548ap-3p	PAR-CLIP	20371350
MIRT569509	hsa-miR-548t-3p	PAR-CLIP	20371350
MIRT569508	hsa-miR-497-3p	PAR-CLIP	20371350
MIRT569506	hsa-miR-4731-3p	PAR-CLIP	20371350
MIRT569507	hsa-miR-4801	PAR-CLIP	20371350
MIRT569505	hsa-miR-181a-2-3p	PAR-CLIP	20371350
MIRT569504	hsa-miR-4726-3p	PAR-CLIP	20371350
MIRT569503	hsa-miR-7162-3p	PAR-CLIP	20371350
MIRT569502	hsa-let-7a-5p	PAR-CLIP	20371350
MIRT569501	hsa-let-7b-5p	PAR-CLIP	20371350
MIRT569500	hsa-let-7c-5p	PAR-CLIP	20371350
MIRT569499	hsa-let-7d-5p	PAR-CLIP	20371350
MIRT569498	hsa-let-7e-5p	PAR-CLIP	20371350
MIRT569497	hsa-let-7f-5p	PAR-CLIP	20371350
MIRT569496	hsa-let-7g-5p	PAR-CLIP	20371350
MIRT569495	hsa-let-7i-5p	PAR-CLIP	20371350
MIRT569494	hsa-miR-4458	PAR-CLIP	20371350
MIRT569493	hsa-miR-4500	PAR-CLIP	20371350
MIRT569492	hsa-miR-98-5p	PAR-CLIP	20371350
MIRT569491	hsa-miR-202-3p	PAR-CLIP	20371350
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT2642242	hsa-miR-103a	CLIP-seq
MIRT2642243	hsa-miR-107	CLIP-seq
MIRT2642244	hsa-miR-1228	CLIP-seq
MIRT2642245	hsa-miR-1301	CLIP-seq
MIRT2642246	hsa-miR-15a	CLIP-seq
MIRT2642247	hsa-miR-15b	CLIP-seq
MIRT2642248	hsa-miR-16	CLIP-seq
MIRT2642249	hsa-miR-195	CLIP-seq
MIRT2642250	hsa-miR-338-3p	CLIP-seq
MIRT2642251	hsa-miR-3908	CLIP-seq
MIRT2642252	hsa-miR-424	CLIP-seq
MIRT2642253	hsa-miR-4530	CLIP-seq
MIRT2642254	hsa-miR-497	CLIP-seq
MIRT2642255	hsa-miR-5047	CLIP-seq
MIRT2642242	hsa-miR-103a	CLIP-seq
MIRT2642243	hsa-miR-107	CLIP-seq
MIRT2642244	hsa-miR-1228	CLIP-seq
MIRT2642245	hsa-miR-1301	CLIP-seq
MIRT2642246	hsa-miR-15a	CLIP-seq
MIRT2642247	hsa-miR-15b	CLIP-seq
MIRT2642248	hsa-miR-16	CLIP-seq
MIRT2642249	hsa-miR-195	CLIP-seq
MIRT2642250	hsa-miR-338-3p	CLIP-seq
MIRT2642251	hsa-miR-3908	CLIP-seq
MIRT2642252	hsa-miR-424	CLIP-seq
MIRT2642253	hsa-miR-4530	CLIP-seq
MIRT2642254	hsa-miR-497	CLIP-seq
MIRT2642255	hsa-miR-5047	CLIP-seq

Show/Hide all(3)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005634	Component	Nucleus	HDA	21630459
GO:0005634	Component	Nucleus	IBA	21873635
GO:0005634	Component	Nucleus	ISS	14601557

MIM	HGNC	e!Ensembl
613739	29560	ENSG00000151500

Protein

UniProt ID

Q9P016

Protein name

Thymocyte nuclear protein 1 (Thymocyte protein Thy28)

Protein function

Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC.

PDB

3EOP , 5J3E

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01878	EVE	55 → 219	EVE domain	Domain

Sequence

MSRPRKRLAGTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTSATKNCLKNLSSHWLMK
SEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKE
PGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKS
YHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEKEPS

Sequence length

225

Interactions

View interactions

Show/Hide Causal Diseases (1)

Disease term	Disease name	dbSNP ID	References
Causal
Prostate cancer	Malignant neoplasm of prostate	rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582	17199135

Show/Hide Text Mining Associations (1)

Disease Name	Relationship Type	References
Associations from Text Mining
Immunologic Deficiency Syndromes	Associate	34440371

THYN1 (thymocyte nuclear protein 1)