Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein
Entrez ID	29087
Gene name	Thymocyte nuclear protein 1
Gene symbol	THYN1
Synonyms (NCBI Gene)	HSPC144MDS012MY105THY28THY28KD
Chromosome	11
Chromosome location	11q25
Summary	This gene encodes a protein that is highly conserved among vertebrates and plant species and may be involved in the induction of apoptosis. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul

108

Show/Hide all (108)

miRTarBase ID	miRNA	Experiments	Reference
MIRT569516	hsa-miR-548ac	PAR-CLIP	20371350
MIRT569515	hsa-miR-548bb-3p	PAR-CLIP	20371350
MIRT569514	hsa-miR-548d-3p	PAR-CLIP	20371350
MIRT569513	hsa-miR-548h-3p	PAR-CLIP	20371350
MIRT569512	hsa-miR-548z	PAR-CLIP	20371350
MIRT569511	hsa-miR-548aa	PAR-CLIP	20371350
MIRT569510	hsa-miR-548ap-3p	PAR-CLIP	20371350
MIRT569509	hsa-miR-548t-3p	PAR-CLIP	20371350
MIRT569508	hsa-miR-497-3p	PAR-CLIP	20371350
MIRT569506	hsa-miR-4731-3p	PAR-CLIP	20371350
MIRT569507	hsa-miR-4801	PAR-CLIP	20371350
MIRT569505	hsa-miR-181a-2-3p	PAR-CLIP	20371350
MIRT569504	hsa-miR-4726-3p	PAR-CLIP	20371350
MIRT569503	hsa-miR-7162-3p	PAR-CLIP	20371350
MIRT569502	hsa-let-7a-5p	PAR-CLIP	20371350
MIRT569501	hsa-let-7b-5p	PAR-CLIP	20371350
MIRT569500	hsa-let-7c-5p	PAR-CLIP	20371350
MIRT569499	hsa-let-7d-5p	PAR-CLIP	20371350
MIRT569498	hsa-let-7e-5p	PAR-CLIP	20371350
MIRT569497	hsa-let-7f-5p	PAR-CLIP	20371350
MIRT569496	hsa-let-7g-5p	PAR-CLIP	20371350
MIRT569495	hsa-let-7i-5p	PAR-CLIP	20371350
MIRT569494	hsa-miR-4458	PAR-CLIP	20371350
MIRT569493	hsa-miR-4500	PAR-CLIP	20371350
MIRT569492	hsa-miR-98-5p	PAR-CLIP	20371350
MIRT569491	hsa-miR-202-3p	PAR-CLIP	20371350
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT569516	hsa-miR-548ac	PAR-CLIP	20371350
MIRT569515	hsa-miR-548bb-3p	PAR-CLIP	20371350
MIRT569514	hsa-miR-548d-3p	PAR-CLIP	20371350
MIRT569513	hsa-miR-548h-3p	PAR-CLIP	20371350
MIRT569512	hsa-miR-548z	PAR-CLIP	20371350
MIRT569511	hsa-miR-548aa	PAR-CLIP	20371350
MIRT569510	hsa-miR-548ap-3p	PAR-CLIP	20371350
MIRT569509	hsa-miR-548t-3p	PAR-CLIP	20371350
MIRT569508	hsa-miR-497-3p	PAR-CLIP	20371350
MIRT569506	hsa-miR-4731-3p	PAR-CLIP	20371350
MIRT569507	hsa-miR-4801	PAR-CLIP	20371350
MIRT569505	hsa-miR-181a-2-3p	PAR-CLIP	20371350
MIRT569504	hsa-miR-4726-3p	PAR-CLIP	20371350
MIRT569503	hsa-miR-7162-3p	PAR-CLIP	20371350
MIRT569502	hsa-let-7a-5p	PAR-CLIP	20371350
MIRT569501	hsa-let-7b-5p	PAR-CLIP	20371350
MIRT569500	hsa-let-7c-5p	PAR-CLIP	20371350
MIRT569499	hsa-let-7d-5p	PAR-CLIP	20371350
MIRT569498	hsa-let-7e-5p	PAR-CLIP	20371350
MIRT569497	hsa-let-7f-5p	PAR-CLIP	20371350
MIRT569496	hsa-let-7g-5p	PAR-CLIP	20371350
MIRT569495	hsa-let-7i-5p	PAR-CLIP	20371350
MIRT569494	hsa-miR-4458	PAR-CLIP	20371350
MIRT569493	hsa-miR-4500	PAR-CLIP	20371350
MIRT569492	hsa-miR-98-5p	PAR-CLIP	20371350
MIRT569491	hsa-miR-202-3p	PAR-CLIP	20371350
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT446444	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT446443	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT446442	hsa-miR-617	PAR-CLIP	22100165
MIRT446441	hsa-miR-6505-3p	PAR-CLIP	22100165
MIRT446440	hsa-miR-4288	PAR-CLIP	22100165
MIRT446439	hsa-miR-632	PAR-CLIP	22100165
MIRT446438	hsa-miR-1231	PAR-CLIP	22100165
MIRT2642242	hsa-miR-103a	CLIP-seq
MIRT2642243	hsa-miR-107	CLIP-seq
MIRT2642244	hsa-miR-1228	CLIP-seq
MIRT2642245	hsa-miR-1301	CLIP-seq
MIRT2642246	hsa-miR-15a	CLIP-seq
MIRT2642247	hsa-miR-15b	CLIP-seq
MIRT2642248	hsa-miR-16	CLIP-seq
MIRT2642249	hsa-miR-195	CLIP-seq
MIRT2642250	hsa-miR-338-3p	CLIP-seq
MIRT2642251	hsa-miR-3908	CLIP-seq
MIRT2642252	hsa-miR-424	CLIP-seq
MIRT2642253	hsa-miR-4530	CLIP-seq
MIRT2642254	hsa-miR-497	CLIP-seq
MIRT2642255	hsa-miR-5047	CLIP-seq
MIRT2642242	hsa-miR-103a	CLIP-seq
MIRT2642243	hsa-miR-107	CLIP-seq
MIRT2642244	hsa-miR-1228	CLIP-seq
MIRT2642245	hsa-miR-1301	CLIP-seq
MIRT2642246	hsa-miR-15a	CLIP-seq
MIRT2642247	hsa-miR-15b	CLIP-seq
MIRT2642248	hsa-miR-16	CLIP-seq
MIRT2642249	hsa-miR-195	CLIP-seq
MIRT2642250	hsa-miR-338-3p	CLIP-seq
MIRT2642251	hsa-miR-3908	CLIP-seq
MIRT2642252	hsa-miR-424	CLIP-seq
MIRT2642253	hsa-miR-4530	CLIP-seq
MIRT2642254	hsa-miR-497	CLIP-seq
MIRT2642255	hsa-miR-5047	CLIP-seq

Show/Hide all (5)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	28514442, 33961781
GO:0005634	Component	Nucleus	HDA	21630459
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	ISS	14601557

MIM	HGNC	e!Ensembl
613739	29560	ENSG00000151500

Q9P016

Protein name

Thymocyte nuclear protein 1 (Thymocyte protein Thy28)

Protein function

Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC.

PDB

3EOP , 5J3E

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01878	EVE	55 → 219	EVE domain	Domain

Sequence

MSRPRKRLAGTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTSATKNCLKNLSSHWLMK
SEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKE
PGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKS
YHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEKEPS

Sequence length

225

Interactions

View interactions

THYN1 (thymocyte nuclear protein 1)