Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
286262
Gene name Gene Name - the full gene name approved by the HGNC.
Taperin
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TPRN
Synonyms (NCBI Gene) Gene synonyms aliases
C9orf75, DFNB79
Disease Acronyms (UniProt) Disease acronyms from UniProt database
DFNB79
Chromosome Chromosome number
9
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9q34.3
Summary Summary of gene provided in NCBI Entrez Gene.
This locus encodes a sensory epithelial protein. It was defined by linkage analysis in three Pakistani families to lie between D9S1818 (centromeric) and D9SH6 (telomeric). Mutations at this locus have been associated with autosomal recessive deafness. [pr
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs72763296 G>A Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs267607135 C>T Pathogenic Stop gained, coding sequence variant
rs387906219 G>- Pathogenic Frameshift variant, coding sequence variant
rs387906220 ->AGCCGCGCCCC Pathogenic Frameshift variant, coding sequence variant
rs387906221 CCCGCCGCGCC>-,CCCGCCGCGCCCCCGCCGCGCC Pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT049039 hsa-miR-92a-3p CLASH 23622248
MIRT039802 hsa-miR-615-3p CLASH 23622248
MIRT1450358 hsa-miR-1825 CLIP-seq
MIRT1450359 hsa-miR-1827 CLIP-seq
MIRT1450360 hsa-miR-198 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003674 Function Molecular_function ND
GO:0005515 Function Protein binding IPI 22321011, 28330616
GO:0007605 Process Sensory perception of sound IMP 20170898, 20170899
GO:0019902 Function Phosphatase binding IEA
GO:0032420 Component Stereocilium ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613354 26894 ENSG00000176058
Protein
UniProt ID Q4KMQ1
Protein name Taperin
Protein function Essential for hearing (By similarity). Required for maintenance of stereocilia on both inner and outer hair cells (By similarity). Necessary for the integrity of the stereociliary rootlet (By similarity). May act as an actin cytoskeleton regulat
PDB 6Y9Q
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13916 Phostensin_N 8 87 PP1-regulatory protein, Phostensin N-terminal Domain
PF13914 Phostensin 467 598 Phostensin PP1-binding and SH3-binding region Domain
Tissue specificity TISSUE SPECIFICITY: Expression is detected in fetal cochlea. {ECO:0000269|PubMed:20170898}.
Sequence
MAALGRPGSGPRAAVPAWKREILERKRAKLAALGGGAGPGAAEPEQRVLAESLGPLRENP
FMLLEAERRRGGGAAGARLLERYRRVP
GVRALRADSVLIIETVPGFPPAPPAPGAAQIRA
AEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAP
GPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAG
SPPGSGQWKPKVESGDPSLHPPPSPGTPSATPASPPASATPSQRQCVSAATSTNDSFEIR
PAPKPVMETIPLGDLQARALASLRANSRNSFMVIPKSKASGAPPPEGRQSVELPKGDLGP
ASPSQELGSQPVPGGDGAPALGKSPLEVEAQWAVEEGACPRTATALADRAIRWQRPSSPP
PFLPAASEEAEPAEGLRVPGLAKNSREYVRPGLPVTFIDEVDSEEAPQAAKLPYLPHPAR
PLHPARPGCVAELQPRGSNTFTVVPKRKPGTLQDQHFSQANREPRPREAEEEEASCLLGP
TLKKRYPTVHEIEVIGGYLALQKSCLTKAGSSRKKMKISFNDKSLQTTFEYPSESSLE
QE
EEVDQQEEEEEEEEEEEEEEEGSGSEEKPFALFLPRATFVSSVRPESSRLPEGSSGLSSY
TPKHSVAFSKWQEQALEQAPREAEPPPVEAMLTPASQNDLSDFRSEPALYF
Sequence length 711
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Deafness Deafness, Autosomal Recessive 79 rs267607135, rs387906219, rs387906220, rs387906221, rs387906222, rs606231120, rs267606855, rs121918370, rs137853185, rs137853186, rs137853187, rs137853188, rs587776522, rs587776523, rs200781822
View all (1019 more)
20170899
Hearing loss Sensorineural Hearing Loss (disorder) rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359
View all (184 more)
Nonsyndromic deafness Nonsyndromic Deafness rs606231410, rs794729665, rs730880338, rs1566538321 20170899, 26226137, 23340767, 20170898, 24285636, 27693694
Associations from Text Mining
Disease Name Relationship Type References
Deafness Associate 23340767
Hearing Loss Associate 23340767, 34360009
Nonsyndromic Deafness Associate 19603065