Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
285362
Gene name Gene Name - the full gene name approved by the HGNC.
Sulfatase modifying factor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SUMF1
Synonyms (NCBI Gene) Gene synonyms aliases
AAPA3037, FGE, UNQ3037
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3p26.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an enzyme that catalyzes the hydrolysis of sulfate esters by oxidizing a cysteine residue in the substrate sulfatase to an active site 3-oxoalanine residue, which is also known as C-alpha-formylglycine. Mutations in this gene cause multi
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs137852844 G>A,T Pathogenic Stop gained, missense variant, intron variant, coding sequence variant
rs137852845 G>A,C Pathogenic Stop gained, missense variant, intron variant, coding sequence variant
rs137852846 G>A Likely-pathogenic Missense variant, intron variant, coding sequence variant
rs137852847 C>T Pathogenic Missense variant, intron variant, coding sequence variant
rs137852848 A>G Pathogenic Missense variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019314 hsa-miR-148b-3p Microarray 17612493
MIRT020442 hsa-miR-106b-5p Microarray 17242205
MIRT022044 hsa-miR-128-3p Microarray 17612493
MIRT1402947 hsa-miR-142-5p CLIP-seq
MIRT1402948 hsa-miR-197 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005783 Component Endoplasmic reticulum IBA 21873635
GO:0005783 Component Endoplasmic reticulum IDA 18266766, 21224894
GO:0005788 Component Endoplasmic reticulum lumen TAS
GO:0006687 Process Glycosphingolipid metabolic process TAS
GO:0016491 Function Oxidoreductase activity TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
607939 20376 ENSG00000144455
Protein
UniProt ID Q8NBK3
Protein name Formylglycine-generating enzyme (FGE) (EC 1.8.3.7) (C-alpha-formylglycine-generating enzyme 1) (Sulfatase-modifying factor 1)
Protein function Oxidase that catalyzes the conversion of cysteine to 3-oxoalanine on target proteins, using molecular oxygen and an unidentified reducing agent (PubMed:12757706, PubMed:15657036, PubMed:15907468, PubMed:16368756, PubMed:21224894, PubMed:25931126
PDB 1Y1E , 1Y1F , 1Y1G , 1Y1H , 1Y1I , 1Y1J , 1Z70 , 2AFT , 2AFY , 2AII , 2AIJ , 2AIK , 2HI8 , 2HIB , 5SSX , 5SSY , 5SSZ , 8ARU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03781 FGE-sulfatase 87 367 Sulfatase-modifying factor enzyme 1 Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. Highly expressed in kidney, pancreas and liver. Detected at lower levels in leukocytes, lung, placenta, small intestine, skeletal muscle and heart. {ECO:0000269|PubMed:15962010}.
Sequence
Sequence length 374
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Lysosome   Glycosphingolipid metabolism
The activation of arylsulfatases
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Developmental regression Developmental regression rs1224421127
Hearing loss Sensorineural Hearing Loss (disorder) rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359
View all (184 more)
Unknown
Disease term Disease name Evidence References Source
Asthma Asthma GWAS
Bipolar Disorder Bipolar Disorder GWAS
Restless Legs Syndrome Restless Legs Syndrome GWAS
Diabetes Diabetes GWAS
Associations from Text Mining
Disease Name Relationship Type References
Anorchia Associate 25885655
Apnea Associate 25516103
Ataxia Associate 25222778
Autism Spectrum Disorder Associate 23715297, 28720891
Autistic Disorder Associate 23715297
Body Dysmorphic Disorders Associate 32048457
Breast Neoplasms Associate 30760814
Chondrodysplasia Punctata Associate 29397290
Colitis Ulcerative Associate 37904461
COVID 19 Associate 37344788