Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
284119
Gene name Gene Name - the full gene name approved by the HGNC.
Caveolae associated protein 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CAVIN1
Synonyms (NCBI Gene) Gene synonyms aliases
CAVIN, CGL4, FKSG13, PTRF, cavin-1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CGL4
Chromosome Chromosome number
17
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
17q21.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that enables the dissociation of paused ternary polymerase I transcription complexes from the 3` end of pre-rRNA transcripts. This protein regulates rRNA transcription by promoting the dissociation of transcription complexes an
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1207466199 TTTC>- Pathogenic Coding sequence variant, frameshift variant, genic downstream transcript variant
rs1427062799 ->G Pathogenic Frameshift variant, genic downstream transcript variant, coding sequence variant
rs1567776490 C>- Pathogenic Frameshift variant, genic downstream transcript variant, coding sequence variant
rs1567776514 ->CACT Pathogenic Frameshift variant, genic downstream transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT043709 hsa-miR-342-3p HITS-CLIP 19536157
MIRT725201 hsa-miR-136-3p HITS-CLIP 19536157
MIRT725200 hsa-miR-216b-3p HITS-CLIP 19536157
MIRT725198 hsa-miR-6760-3p HITS-CLIP 19536157
MIRT725199 hsa-miR-6785-3p HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003723 Function RNA binding HDA 22658674
GO:0005515 Function Protein binding IPI 17026959, 19525939, 19726876, 24013648, 24567387, 28514442, 32296183
GO:0005634 Component Nucleus IDA 15242332
GO:0005654 Component Nucleoplasm TAS
GO:0005737 Component Cytoplasm IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603198 9688 ENSG00000177469
Protein
UniProt ID Q6NZI2
Protein name Caveolae-associated protein 1 (Cavin-1) (Polymerase I and transcript release factor)
Protein function Plays an important role in caveolae formation and organization. Essential for the formation of caveolae in all tissues (PubMed:18056712, PubMed:18191225, PubMed:19726876). Core component of the CAVIN complex which is essential for recruitment of
PDB 9EG6 , 9EGN , 9EIU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15237 PTRF_SDPR 48 320 PTRF/SDPR family Family
Sequence
Sequence length 390
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    RNA Polymerase I Transcription Termination
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Atrial fibrillation Atrial Fibrillation rs120074192, rs121908590, rs121908593, rs121434558, rs587776851, rs387906612, rs387906613, rs387906614, rs387906615, rs199472687, rs199472705, rs199473324, rs587777336, rs587777339, rs587777557
View all (6 more)
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
Congenital lipodystrophy Congenital generalized lipodystrophy rs786205069, rs587777608, rs786205071, rs137852970, rs137852971, rs758843908, rs137852973, rs137852974, rs137852975, rs1427062799, rs1567776490, rs1567782465, rs1489315815, rs104894093, rs116807569
View all (34 more)
Diabetes mellitus Diabetes Mellitus rs587776515, rs61730328, rs606231121, rs606231122, rs79020217, rs77625743, rs78378398, rs606231123, rs1362648752, rs104893649, rs80356624, rs80356616, rs80356625, rs80356611, rs104894237
View all (293 more)
Unknown
Disease term Disease name Evidence References Source
Acanthosis nigricans Acanthosis Nigricans ClinVar
Atherosclerosis Atherosclerosis ClinVar
Cirrhosis Cirrhosis ClinVar
Congestive heart failure Congestive heart failure ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Acanthosis Nigricans Associate 20684003
Arrhythmias Cardiac Associate 20300641, 20684003
Breast Neoplasms Associate 35589867
Carcinogenesis Inhibit 27203393
Carcinoma Hepatocellular Inhibit 37774837
Carcinoma Non Small Cell Lung Associate 22461895
Carcinoma Renal Cell Associate 36443833
Cell Transformation Neoplastic Inhibit 27203393
Cell Transformation Neoplastic Associate 9685730
Colorectal Neoplasms Inhibit 27203393