Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
28234
Gene name Gene Name - the full gene name approved by the HGNC.
Solute carrier organic anion transporter family member 1B3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SLCO1B3
Synonyms (NCBI Gene) Gene synonyms aliases
HBLRR, LST-2, LST-3TM13, LST3, OATP-8, OATP1B3, OATP8, SLC21A8
Disease Acronyms (UniProt) Disease acronyms from UniProt database
HBLRR
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12p12.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a liver-specific member of the organic anion transporter family. The encoded protein is a transmembrane receptor that mediates the sodium-independent uptake of endogenous and xenobiotic compounds and plays a critical role in bile acid an
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT614563 hsa-miR-8485 HITS-CLIP 21572407
MIRT614562 hsa-miR-329-3p HITS-CLIP 21572407
MIRT614561 hsa-miR-362-3p HITS-CLIP 21572407
MIRT614560 hsa-miR-603 HITS-CLIP 21572407
MIRT614559 hsa-miR-4789-3p HITS-CLIP 21572407
Transcription factors
Transcription factor Regulation Reference
FOXA2 Unknown 16741617
HNF1A Unknown 16741617
NR1H4 Unknown 16741617
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005886 Component Plasma membrane IDA
GO:0005886 Component Plasma membrane TAS
GO:0005887 Component Integral component of plasma membrane IBA 21873635
GO:0008514 Function Organic anion transmembrane transporter activity TAS 10779507
GO:0015125 Function Bile acid transmembrane transporter activity IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
605495 10961 ENSG00000111700
Protein
UniProt ID Q9NPD5
Protein name Solute carrier organic anion transporter family member 1B3 (Liver-specific organic anion transporter 2) (LST-2) (OATP1B3) (Organic anion transporter 8) (Organic anion-transporting polypeptide 8) (OATP-8) (Solute carrier family 21 member 8)
Protein function Mediates the Na(+)-independent uptake of organic anions (PubMed:10779507, PubMed:15159445, PubMed:17412826). Shows broad substrate specificity, can transport both organic anions such as bile acid taurocholate (cholyltaurine) and conjugated stero
PDB 8PG0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03137 OATP 29 621 Organic Anion Transporter Polypeptide (OATP) family Family
PF07648 Kazal_2 460 506 Kazal-type serine protease inhibitor domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in liver, in particular at the basolateral membrane of hepatocytes near the central vein (PubMed:10779507, PubMed:15159445). Expressed in the placenta (PubMed:12409283). In testis, primarily localized to the basal memb
Sequence
Sequence length 702
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Bile secretion
Folate transport and metabolism
  Recycling of bile acids and salts
Heme degradation
Defective SLCO1B3 causes hyperbilirubinemia, Rotor type (HBLRR)
Transport of organic anions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Colonic neoplasms Malignant tumor of colon, Colonic Neoplasms rs267607789, rs774277300, rs781222233, rs1060502734, rs1060503333, rs1339238483 25625007, 22326869
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
29491222
Colorectal neoplasms Colorectal Neoplasms rs28929483, rs63751108, rs28929484, rs63749831, rs63750047, rs63751207, rs63749811, rs1553350126, rs63750875, rs63750955, rs587776706, rs63750871, rs587776715, rs63751466, rs63750049
View all (1682 more)
29491222
Lung cancer Malignant neoplasm of lung rs121913530, rs121913529, rs878855122, rs1057519784, rs770315135 22326869, 25625007
Unknown
Disease term Disease name Evidence References Source
Rotor Syndrome Rotor syndrome GenCC
Obsessive-Compulsive Disorder Obsessive-Compulsive Disorder GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Stimulate 23307416
Adenocarcinoma Associate 29658575
Adenocarcinoma of Lung Associate 34902990
Adrenocortical Carcinoma Associate 32607875
Bile Duct Diseases Associate 21615622
Breast Neoplasms Associate 17760952
Breast Neoplasms Inhibit 33436824
Carcinoma Hepatocellular Associate 12695556, 19404564, 21615622, 32534581
Cardiotoxicity Associate 34230586
Chemical and Drug Induced Liver Injury Associate 24614281